View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2700R-Insertion-6 (Length: 822)
Name: NF2700R-Insertion-6
Description: NF2700R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700R-Insertion-6 |
 | |
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| [»] scaffold2134 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 508
Target Start/End: Original strand, 4966439 - 4966936
Alignment:
| Q |
20 |
aatctttcttactaaagcttatttggtga-gctattgtttgccctaattctaaacctaatttttccctccactaaacaagcattaaatcctctaaagtgg |
118 |
Q |
| |
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|||||| |||| |||||||| | |||| | |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4966439 |
aatcttacttattaaagcttgtctggtcaagctattgtttaccctaattctaaacctaatatttccctccactaaacaagcattaaatcctctaaagtgg |
4966538 |
T |
|
| Q |
119 |
ttttccttatcagcattccactcaaaaattcaattttgcatcccacacatttcttaacctaccaatccattgtatc---tact------aaggaatccaa |
209 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
4966539 |
ttttccttatcagcattcca-tcaacaattcaatttttcatcccacacatttcttaacctaccaatccattgtatccattactgcaattaaggaatccaa |
4966637 |
T |
|
| Q |
210 |
tcatgtctatcggttactccacaatcatgtgtcattttcaaatctagcaacccttttgttttcccaacatgccaattatgctccctatgcatctaaaaac |
309 |
Q |
| |
|
|||| | |||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4966638 |
tcatctgtatcggttactccacaatcatgtgccattttcaaatccagcagcccttttgttttcccaacatgccaattatgctccctatgcatctaaaaac |
4966737 |
T |
|
| Q |
310 |
tcaaccagcccctttcaactgtccttccctgcaatatatatacgtatgtttgcataacatattcagtcgcagtttctaaacaaaattcttgaaaaacaaa |
409 |
Q |
| |
|
|||||| ||||||||| ||||| |||||| | |||||||| |||||||| ||||||| ||||| | |||||||||||||||||| ||| ||||||| | |
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|
| T |
4966738 |
tcaaccggcccctttcccatgtccatccctgtagtatatatatgtatgtttacataacagattcatttgcagtttctaaacaaaatccttcaaaaacata |
4966837 |
T |
|
| Q |
410 |
atattcacttccctttttatataatggctgatcgtcctctaactgcgttgttgacctaccattgcctgaccggtatttacaagccagatttgttttgta |
508 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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|
| T |
4966838 |
atattcacttccctttttatataatggttgatcgtcctctaactgcgttgttgacctaccattgcctgaccggtatttacatgccagatttgttgtgta |
4966936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 508
Target Start/End: Complemental strand, 9889021 - 9888523
Alignment:
| Q |
19 |
aaatctttcttactaaagcttatttggtga-gctattgtttgccctaattctaaacctaatttttccctccactaaacaagcattaaatcctctaaagtg |
117 |
Q |
| |
|
||||||| |||| |||||||| | |||| | |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
9889021 |
aaatcttacttattaaagcttgtctggtcaagctattgtttaccctaattctaaacctaatatttccctccactaaacaagcattaaatcctctaaagtg |
9888922 |
T |
|
| Q |
118 |
gttttccttatcagcattccactcaaaaattcaattttgcatcccacacatttcttaacctaccaatccattgtatctacta---------aggaatcca |
208 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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|
| T |
9888921 |
gttttccttatcagcattcca-tcaacaattcaatttttcatcccacacatttcttaacctaccaatccattgtatccactactgcaattaaggaatcca |
9888823 |
T |
|
| Q |
209 |
atcatgtctatcggttactccacaatcatgtgtcattttcaaatctagcaacccttttgttttcccaacatgccaattatgctccctatgcatctaaaaa |
308 |
Q |
| |
|
||||| | |||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9888822 |
atcatctgtatcggttactccacaatcatgtgccattttcaaatccagcagcccttttgttttcccaacatgccaattatgctccctatgcatctaaaaa |
9888723 |
T |
|
| Q |
309 |
ctcaaccagcccctttcaactgtccttccctgcaatatatatacgtatgtttgcataacatattcagtcgcagtttctaaacaaaattcttgaaaaacaa |
408 |
Q |
| |
|
||||||| ||||||||| ||||| |||||| | |||||||| |||||||| ||||||| ||||| | |||||||||||||||||| ||| ||||||| |
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|
| T |
9888722 |
ctcaaccggcccctttcccatgtccatccctgtagtatatatatgtatgtttacataacagattcatttgcagtttctaaacaaaatccttcaaaaacat |
9888623 |
T |
|
| Q |
409 |
aatattcacttccctttttatataatggctgatcgtcctctaactgcgttgttgacctaccattgcctgaccggtatttacaagccagatttgttttgta |
508 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| |
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|
| T |
9888622 |
aatattcacttccctttttatataatggttgatcgtcctctaactgcgttgttgacctaccattgcctgacccgtatttacatgccagatttgttgtgta |
9888523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 21 - 324
Target Start/End: Original strand, 28926075 - 28926388
Alignment:
| Q |
21 |
atctttcttactaaagcttatttggtga-gctattgtttgccctaattctaaacctaatttttccctccactaaacaagcattaaatcctctaaagtggt |
119 |
Q |
| |
|
||||||||||||||||||| | |||| | |||||| | |||||||||| ||||||||||||||||||||||| || |||| ||| |||| ||||||| |
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|
| T |
28926075 |
atctttcttactaaagcttgtctggtcaagctattagtaaccctaattcttaacctaatttttccctccactaatcacacatttaattctcttaagtggt |
28926174 |
T |
|
| Q |
120 |
tttccttatcagcattccactcaaaaattcaattttgcatcccacacatttcttaacctaccaatccattgtatctac---------taaggaatccaat |
210 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||| ||| |||||||||| ||||| | || | ||||||||| ||||| ||| | || |||| |
|
|
| T |
28926175 |
tttccttatcagcatttcactcaacaattcaagttttcatcccacacgtttctaattctgtcgatccattgtttctactactgtatttaatgcattcaat |
28926274 |
T |
|
| Q |
211 |
catgtctatcggttactccacaatcatgtgtcattttcaaatctagcaacccttttgttttcccaacatgccaattatgctccctatgcatctaaaaact |
310 |
Q |
| |
|
||| | | | | || ||||| ||||||| | |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
28926275 |
catctatgttgttttctccaaaatcatgcgccattttcaaatctaacagcccttttgttttcccaacatgccaattatgctccctatgcatcttaaaact |
28926374 |
T |
|
| Q |
311 |
caaccagccccttt |
324 |
Q |
| |
|
| ||| |||||||| |
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|
| T |
28926375 |
ccaccggccccttt |
28926388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 6667463 - 6667531
Alignment:
| Q |
21 |
atctttcttactaaagcttatttggtga-gctattgtttgccctaattctaaacctaatttttccctcca |
89 |
Q |
| |
|
||||||||| ||||||||| |||||| | |||||||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
6667463 |
atctttctttctaaagcttgtttggtcaagctattgtttaccctaatcctaa-cctaatttttccctcca |
6667531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 4e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 37605451 - 37605345
Alignment:
| Q |
60 |
ccctaattctaaacctaat-ttttccctccactaaacaagcattaaatcctctaaagtggttttccttatcagcattccactcaaaaattcaattttgca |
158 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||| ||| |||| ||| |||| |||||||||||||||||||||| ||||||| ||||||| ||| || |
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|
| T |
37605451 |
ccctaattcttaacctaatattttccctccactaatcaaacatttaattctcttgagtggttttccttatcagcatttcactcaacaattcaagttttca |
37605352 |
T |
|
| Q |
159 |
tcccaca |
165 |
Q |
| |
|
||||||| |
|
|
| T |
37605351 |
tcccaca |
37605345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 37605257 - 37605186
Alignment:
| Q |
245 |
tttcaaatctagcaacccttttgttttcccaacatgccaattatgctccctatgcatctaaaaactcaacca |
316 |
Q |
| |
|
|||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
37605257 |
tttcaattctagcagcccttttattttcccaacatgccaattatgctccctatgcatattaaaactccacca |
37605186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 15291461 - 15291529
Alignment:
| Q |
21 |
atctttcttactaaagcttatttggt-gagctattgtttgccctaattctaaacctaatttttccctcca |
89 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
15291461 |
atctttcttactaaagcttgtttggtcaagctattgtttaccctaa-tcttaacctaatttttccctcca |
15291529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 15996449 - 15996384
Alignment:
| Q |
21 |
atctttcttactaaagcttatttggtga-gctattgtttgccctaattctaaacctaatttttccct |
86 |
Q |
| |
|
||||||||||||||||||| | || | | |||||||||| |||||||||| |||||||||||||||| |
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|
| T |
15996449 |
atctttcttactaaagcttgtctgatcaagctattgtttaccctaattct-aacctaatttttccct |
15996384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 46555542 - 46555648
Alignment:
| Q |
60 |
ccctaattctaaacctaat-ttttccctccactaaacaagcattaaatcctctaaagtggttttccttatcagcattccactcaaaaattcaattttgca |
158 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||| ||| |||| ||| |||| |||||||||||||||||||||| ||||||| ||||||| ||| || |
|
|
| T |
46555542 |
ccctaattcttaacctaatattttccctccactaatcaaacatttaattctcttgagtggttttccttatcagcatttcactcaacaattcaagttttca |
46555641 |
T |
|
| Q |
159 |
tcccaca |
165 |
Q |
| |
|
||||||| |
|
|
| T |
46555642 |
tcccaca |
46555648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 46555736 - 46555807
Alignment:
| Q |
245 |
tttcaaatctagcaacccttttgttttcccaacatgccaattatgctccctatgcatctaaaaactcaacca |
316 |
Q |
| |
|
|||||| ||||||| ||||||| |||||||||||||||||||||||||||| ||||| | ||||||| |||| |
|
|
| T |
46555736 |
tttcaattctagcagcccttttattttcccaacatgccaattatgctccctttgcatattaaaactccacca |
46555807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2134 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold2134
Description:
Target: scaffold2134; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 582 - 710
Target Start/End: Original strand, 292 - 420
Alignment:
| Q |
582 |
ttgtaggacctttgattcgaaaccctaccacagagattgataaaacggtcaacaaacttcggttgaaatataggacgtattccatagattatgaagttga |
681 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| | || ||| | || |||||||| ||||| ||| ||||||| | |||||||| |||||||| |
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|
| T |
292 |
ttgtaggacctttgatcaaaaacccttccacagagattaacaagacgattaagaaacttcgtttgaagtattggacgtacacgatagattacgaagttga |
391 |
T |
|
| Q |
682 |
ttgtgtgcgtttaaatttgttgctatttt |
710 |
Q |
| |
|
||||||| |||||||| || ||||||||| |
|
|
| T |
392 |
ttgtgtgggtttaaatgtgctgctatttt |
420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 48850722 - 48850794
Alignment:
| Q |
17 |
ataaatctttcttactaaagcttatttggt-gagctattgtttgccctaattctaaacctaatttttccctcca |
89 |
Q |
| |
|
||||||||||||| ||||||||| | || | ||||||||||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
48850722 |
ataaatctttctttctaaagcttgtctgatcaagctattgtttaccctaa-tcttaacctaatttttccctcca |
48850794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 693
Target Start/End: Original strand, 37337940 - 37337989
Alignment:
| Q |
644 |
ttgaaatataggacgtattccatagattatgaagttgattgtgtgcgttt |
693 |
Q |
| |
|
||||| ||||||||||| ||||||||| |||||||||||||||| |||| |
|
|
| T |
37337940 |
ttgaagtataggacgtacaccatagattgtgaagttgattgtgtgggttt |
37337989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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