View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700R-Insertion-7 (Length: 690)

Name: NF2700R-Insertion-7
Description: NF2700R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700R-Insertion-7
NF2700R-Insertion-7
[»] chr3 (1 HSPs)
chr3 (9-690)||(24066776-24067457)


Alignment Details
Target: chr3 (Bit Score: 666; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 9 - 690
Target Start/End: Complemental strand, 24067457 - 24066776
Alignment:
Q  9 tcttagaccgactctagcgcggcgaatagctcggcagattgtgctgattgcttcgttttgaccgatgacgtgtttgtgaagcatgtcttctaagttgagg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24067457 tcttagaccgactctagcgcggcgaatagctcggcagattgtgctgattgcttcgttttgaccgatgacgtgtttgtgaagcatgtcttctaagttgagg 24067358  T
Q  109 agattttcgccttcttcctttgatacatcactgactggtactccaatccaagaagaaataacatgttgaatatcacactttttcacactgggaatagaaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24067357 agattttcgccttcttcctttgatacatcactgactggtactccaatccaagaagaaataacatgttgaatatcacactttttcacactaggaatagaaa 24067258  T
Q  209 cattacccctctttttgttctgtttcaaaaggattcaacaaaaatactcatttgattgatccaaacatttgagaattataagttatatcacatattaatt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24067257 cattacccctctttttgttctgtttcaaaaggattcaacaaaaatactcatttgattgatccaaacattagagaattataagttatatcacatattaatt 24067158  T
Q  309 accatttcgtacctttgcatgacaaagttgaacatgtgatccagcttcatcaatcaaatcaattgccttatcaggtaagaaacgctcgctgaaatttact 408  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24067157 accatttcgcacctttgcatgacaaagttgaacatgtgatccagcttcatcaatcaaatcaattgccttatcaggtaagaaacgctcgctgaaatttact 24067058  T
Q  409 cgcgcagaaacatatgtgaaaaactagagactcatttctgttataatatatgttgtagaattggcgctaataataattttagtaacacatttttacctta 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24067057 cgcgcagaaacatatgtgaaaaactagagactcatttctgttataatatatgttgtagaattggcgctaataataattttagtaacacatttttacctta 24066958  T
Q  509 catattgctgagacaaatttgcagctgcaacaagagcttcatctgtgtaatgaagtttataatgcgactcatatgttccgcggaggcctttaagaatttc 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24066957 catattgctgagacaaatttgcagctgcaacaagagcttcatctgtgtaatgaagtttataatgcgactcatatgttccgcggaggcctttaagaatttc 24066858  T
Q  609 tatggtttcttcaacagatggttcaaccactttaactggttgaaataatctttttaaggttgtatcattttccatgtgcatt 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24066857 tatggtttcttcaacagatggttcaaccactttaactggttgaaatattctttttaaggttgtatcattttccatgtgcatt 24066776  T

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