View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700R-Insertion-9 (Length: 620)
Name: NF2700R-Insertion-9
Description: NF2700R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700R-Insertion-9 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 8 - 620
Target Start/End: Original strand, 779930 - 780548
Alignment:
| Q |
8 |
atgagtttattgaacttatcacatttaatttgtccgacacatgttagacatcatagacgtcatctatcataagtgtatgtgctataaagctaatgaccta |
107 |
Q |
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| T |
779930 |
atgagtttattgaacttatcacagtt-----gtccgacacatgttagacatcatagacgtcatctatcataagtgtatgtgctataaagctaatgaccta |
780024 |
T |
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| Q |
108 |
gacaatccatcaacaaacagtgacgaagctggttggaaaccgttta-------ggaatcaatttgattgtgcgtgatggaatcaattttgtgttttatat |
200 |
Q |
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| T |
780025 |
gacaatccatcaacaaacagcgacgaagctggttggaaaccgtttaaatactaggaatcaatttgattgtgcatgatggaatcaattttgtgttttatat |
780124 |
T |
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| Q |
201 |
cacttaactattcatta----ctggaatagtaacaaataacactaaatggttatcaactttactattttaaggnnnnnnnacacctttgttctttataat |
296 |
Q |
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| T |
780125 |
cacttaactattcattagctactggaatagtaacaaataacactaaatggttatcaactttactattttaaggtttttttacacctttgttctttataat |
780224 |
T |
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| Q |
297 |
ggaca-ctccaaatcatggtaatggcatggatctggagaaatattcctggactcaaactttgcaagagctcaatgtgaatgttccggtgccaaatggaac |
395 |
Q |
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| T |
780225 |
ggacagctccaaatcaaggtaatggcatggatctggagaaatattcctggactcaaactttgcaagagctcaatgtgaatgttccggtgccaaatggaac |
780324 |
T |
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| Q |
396 |
aaaatcaggatttgtcatctgtgagataaagaagaatcatctaaaagttggactcaaagggcagccaccaattattgatgtaagcttttactcagttata |
495 |
Q |
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| T |
780325 |
aaaatcagggtttgtcatctgtgagataaagaagaatcatctaaaagttggactcaaagggcagccaccaattattgatgtaagcttttactcagttata |
780424 |
T |
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| Q |
496 |
tattcggagttactatcaaaagataaatcttacctgcgacatatatttgtgttatttttctaaattgatcgttccttttatctttcaatctgtaattttt |
595 |
Q |
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| T |
780425 |
tattcgcagttactatcaaaagataaatcttacctgcgacatatatttgtgttattttt-gaaattgatcgttccttttatctttcaatctgtaattttt |
780523 |
T |
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| Q |
596 |
agtttgtttgaagtttttgtgatgt |
620 |
Q |
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| T |
780524 |
agtttgtttgaagtttttgtgatgt |
780548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 284 - 495
Target Start/End: Complemental strand, 771133 - 770921
Alignment:
| Q |
284 |
tgttctttataatggaca-ctccaaatcatggtaatggcatggatctggagaaatattcctggactcaaactttgcaagagctcaatgtgaatgttccgg |
382 |
Q |
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| T |
771133 |
tgttttttataatggacagcaccaaatcagggtaatggtatggatttggagaagtattcctggactcaaactttgcaagagctgaatgtgaatgttccag |
771034 |
T |
|
| Q |
383 |
tgccaaatggaacaaaatcaggatttgtcatctgtgagataaagaagaatcatctaaaagttggactcaaagggcagccaccaattattgatgtaagctt |
482 |
Q |
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| T |
771033 |
tgccaaatggaacaaaatcagggtttgtcatctgtgagattaagaagaaccatctaaaagttggactcaaagggcagccaccaattattgatgtaagcat |
770934 |
T |
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| Q |
483 |
ttactcagttata |
495 |
Q |
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| T |
770933 |
ttactcagttata |
770921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 281 - 486
Target Start/End: Original strand, 784904 - 785110
Alignment:
| Q |
281 |
ctttgttctttataatggaca-ctccaaatcatggtaatggcatggatctggagaaatattcctggactcaaactttgcaagagctcaatgtgaatgttc |
379 |
Q |
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| T |
784904 |
ctttgctctttttaattgacagctcccaatcagggtaatggtatggatctggagaaatattcttggactcaaactcttcaagagctcaatgtgaatgttc |
785003 |
T |
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| Q |
380 |
cggtgccaaatggaacaaaatcaggatttgtcatctgtgagataaagaagaatcatctaaaagttggactcaaagggcagccaccaattattgatgtaag |
479 |
Q |
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| T |
785004 |
cagtgccaaacggaacaaaatcaaggtttgtcacatgtgagataaagaagaaccatctaaaagttggaatcaaagggcagccaccaattattgatgtaag |
785103 |
T |
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| Q |
480 |
cttttac |
486 |
Q |
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| T |
785104 |
cttttac |
785110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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