View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_high_11 (Length: 589)
Name: NF2700_high_11
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 12 - 571
Target Start/End: Original strand, 7419727 - 7420283
Alignment:
| Q |
12 |
atgaaggcagaattggatgtcacaatagcaaatgcgtgaacaacaggacagtatgccacatcttttccacgaatattatacagccaagcaacctgtattt |
111 |
Q |
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| T |
7419727 |
atgaaggcagaattggatgtcacaatagcaaatgcgtgaacaacaggacagtatgccacatcttttccacgaatattatacagccaagcaacctgtattt |
7419826 |
T |
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| Q |
112 |
agatgacatcgaataaaatgnnnnnnnnnnnnntagcatcaaaagggtgaatgtttgaggcagaaaatatcctctaattaaaaaacaaaactgtaagggg |
211 |
Q |
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| T |
7419827 |
ggatgacatcgaataaaatgaaaaaaaaaa---tagcatcaaaagggtgaatgtttgaggcagaaaatatcctctaattaaaaaacaaaactgtaagggg |
7419923 |
T |
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| Q |
212 |
aaacaaacacaaagtacaaactgttaagaggatacactcacttcgtcgagtgctgttaaaactattcctcgagcatgctcctgtgcaagcttttttctca |
311 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7419924 |
aaagaaacacaaagtacaaactgttaagaggatacactcacttcgtcgagtgctgttaaaactattcctcgagcatgctcctgtgcaagcttttttctca |
7420023 |
T |
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| Q |
312 |
aatctttcaacttatctgtgacagagcgacctgcaaactttaatggttgtacaacggcagcattaatttctgctggtgggcgtgttgtccatacttcatc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7420024 |
aatctttcaacttatctgtgacagagcgacctgcaaactttaatggttgtacaacggcagcattaatttctgctggtgggcgtgttgtccatacttcatc |
7420123 |
T |
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| Q |
412 |
aaccaaattctttgttgtttggaccagcttctgctgttttttggcaaaagcacgttcccatctttgagcagtatcaattgaaatgcaccaggggtcaacc |
511 |
Q |
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| T |
7420124 |
aaccaaattctttgttgtttggaccagcttctgctgttttttggcaaaagcacgttcccatctttgagcagtatcgattgaaatgcaccaggggtcaacc |
7420223 |
T |
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| Q |
512 |
ccaattgctgcatcttttggcaagttctagtaaatggaaatgacttgtcagtacaaacat |
571 |
Q |
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| T |
7420224 |
ccaattgctgcatcttttggcaagttctagtaaatggaaatgacttatcagtacaaacat |
7420283 |
T |
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