View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_high_14 (Length: 508)
Name: NF2700_high_14
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_14 |
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| [»] scaffold0553 (1 HSPs) |
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| [»] scaffold0086 (2 HSPs) |
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Alignment Details
Target: scaffold0553 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0553
Description:
Target: scaffold0553; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 43 - 257
Target Start/End: Original strand, 7137 - 7351
Alignment:
| Q |
43 |
tcccattcccttgattaaacacgcctgattgaacattccctcaatataatgaatttttaaatgaatatttgcaaacactaagttatgttactacttcctt |
142 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7137 |
tcccattcccttgattaaacacgcctgattgaacattccttcaatataatgaatttttaaatgaatatttgcaaacactaagttatgttactacttcctt |
7236 |
T |
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| Q |
143 |
ttcttattgattaaatttcttttgaaactaatctgttacatgtatgaaaagtatatattaccttgcaaattcatcgaatcaaaatgggtttcactaaggc |
242 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7237 |
ttcttattcattaaatttcttttgaaactaagttgttacatgtatgaaaagtatatattaccttgcaaattcatcgaatcaaaatgggtttcactaaggc |
7336 |
T |
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| Q |
243 |
ccccaaaaaatcatt |
257 |
Q |
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||||||||||||||| |
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| T |
7337 |
ccccaaaaaatcatt |
7351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 43 - 250
Target Start/End: Original strand, 15603052 - 15603259
Alignment:
| Q |
43 |
tcccattcccttgattaaacacgcctgattgaacattccctcaatataatgaatttttaaatgaatatttgcaaacactaagttatgttactacttcctt |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15603052 |
tcccattcccttgattaaacacgcctgattgaacattccctcaatataatgaatttttaaatgaatatttgcaaacactaagttatgttactacttcctt |
15603151 |
T |
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| Q |
143 |
ttcttattgattaaatttcttttgaaactaatctgttacatgtatgaaaagtatatattaccttgcaaattcatcgaatcaaaatgggtttcactaaggc |
242 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| |
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| T |
15603152 |
ttcttattgaataaatttcttttgaaactaagctgttacatgtatgaaaagtatatattaccttgcaaattcatctaataaaaatgggcttcactaaggc |
15603251 |
T |
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| Q |
243 |
ccccaaaa |
250 |
Q |
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|||||||| |
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| T |
15603252 |
ccccaaaa |
15603259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 46 - 257
Target Start/End: Complemental strand, 42152 - 41943
Alignment:
| Q |
46 |
cattcccttgattaaacacgcctgattgaacattccctcaatataatgaatttttaaatgaatatttgcaaacactaagttatgttactacttccttttc |
145 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42152 |
cattcccttgattaaacacgtctgattgaacattccctcaatataatga--ttttaaatgaatatttgcaaacactaagttatgttactacttccttttc |
42055 |
T |
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| Q |
146 |
ttattgattaaatttcttttgaaactaatctgttacatgtatgaaaagtatatattaccttgcaaattcatcgaatcaaaatgggtttcactaaggcccc |
245 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| |||||| |
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| T |
42054 |
ttatttattaaatttcttttgaaactaagttgttacatgtatgaaaagtatatatttccttgcaaattcatctaatcaaaatgggcttcactacggcccc |
41955 |
T |
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| Q |
246 |
caaaaaatcatt |
257 |
Q |
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|||||| ||||| |
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| T |
41954 |
caaaaattcatt |
41943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 97 - 257
Target Start/End: Complemental strand, 37394 - 37234
Alignment:
| Q |
97 |
ttttaaatgaatatttgcaaacactaagttatgttactacttccttttcttattgattaaatttcttttgaaactaatctgttacatgtatgaaaagtat |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37394 |
ttttaaatgaatatttgcaaacactaagttatgttactacttccttttcttattgagtaaatttcttttgaaactaagctgttacatgtatgaaaagtat |
37295 |
T |
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| Q |
197 |
atattaccttgcaaattcatcgaatcaaaatgggtttcactaaggcccccaaaaaatcatt |
257 |
Q |
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||||| ||||||||||||||| |||||||||||| ||||||| |||||||||||| ||||| |
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| T |
37294 |
atattgccttgcaaattcatctaatcaaaatgggcttcactacggcccccaaaaattcatt |
37234 |
T |
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