View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700_high_15 (Length: 482)

Name: NF2700_high_15
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700_high_15
NF2700_high_15
[»] chr8 (37 HSPs)
chr8 (2-77)||(13422203-13422278)
chr8 (12-75)||(32877434-32877497)
chr8 (9-75)||(6028484-6028550)
chr8 (12-81)||(2872968-2873037)
chr8 (12-76)||(22201395-22201459)
chr8 (12-76)||(37372255-37372319)
chr8 (12-75)||(34901440-34901503)
chr8 (12-75)||(36483432-36483495)
chr8 (12-75)||(4245937-4246000)
chr8 (12-75)||(16384614-16384677)
chr8 (12-75)||(28876624-28876687)
chr8 (12-75)||(32759370-32759433)
chr8 (12-75)||(43771762-43771825)
chr8 (12-74)||(27886188-27886250)
chr8 (12-74)||(27944846-27944908)
chr8 (17-74)||(40412433-40412490)
chr8 (12-74)||(19436272-19436334)
chr8 (12-74)||(19572421-19572483)
chr8 (12-70)||(19948054-19948112)
chr8 (12-77)||(12580611-12580676)
chr8 (12-72)||(32638914-32638974)
chr8 (17-77)||(37668577-37668637)
chr8 (12-76)||(45217278-45217342)
chr8 (12-67)||(5818369-5818424)
chr8 (6-77)||(12357884-12357954)
chr8 (6-77)||(12359012-12359082)
chr8 (9-75)||(32678-32744)
chr8 (12-74)||(25022123-25022185)
chr8 (18-75)||(29355620-29355677)
chr8 (12-65)||(32424928-32424981)
chr8 (12-72)||(27968103-27968163)
chr8 (12-72)||(28025089-28025149)
chr8 (28-72)||(28737255-28737299)
chr8 (12-75)||(38388664-38388727)
chr8 (18-72)||(7411636-7411690)
chr8 (16-66)||(20182380-20182430)
chr8 (34-74)||(41099366-41099406)
[»] chr2 (35 HSPs)
chr2 (12-75)||(20536772-20536835)
chr2 (12-75)||(28746710-28746773)
chr2 (12-75)||(1776494-1776557)
chr2 (12-75)||(7876711-7876774)
chr2 (12-75)||(38602380-38602443)
chr2 (2-75)||(4170550-4170623)
chr2 (12-72)||(3563851-3563911)
chr2 (23-75)||(7807443-7807495)
chr2 (12-76)||(33324814-33324878)
chr2 (12-74)||(6497707-6497769)
chr2 (12-73)||(1005512-1005573)
chr2 (12-73)||(2319274-2319335)
chr2 (17-74)||(45159361-45159418)
chr2 (12-76)||(40308955-40309019)
chr2 (12-75)||(6124170-6124233)
chr2 (9-72)||(14217209-14217272)
chr2 (12-75)||(16561797-16561860)
chr2 (12-75)||(18300969-18301032)
chr2 (17-75)||(31236249-31236307)
chr2 (2-72)||(35342317-35342387)
chr2 (9-70)||(37134353-37134414)
chr2 (12-72)||(4355325-4355385)
chr2 (12-72)||(24585530-24585589)
chr2 (9-72)||(21104482-21104545)
chr2 (9-72)||(22484267-22484330)
chr2 (33-75)||(5588104-5588146)
chr2 (2-72)||(34146180-34146250)
chr2 (18-72)||(44156597-44156651)
chr2 (9-66)||(8482972-8483029)
chr2 (9-74)||(14824146-14824211)
chr2 (19-75)||(12819298-12819354)
chr2 (12-72)||(22570937-22570997)
chr2 (9-77)||(43214567-43214635)
chr2 (12-75)||(4561785-4561848)
chr2 (17-72)||(25933565-25933620)
[»] scaffold0037 (1 HSPs)
scaffold0037 (12-77)||(27839-27904)
[»] chr3 (42 HSPs)
chr3 (16-77)||(52121175-52121236)
chr3 (12-75)||(28704724-28704787)
chr3 (18-76)||(55269076-55269134)
chr3 (12-77)||(7327707-7327772)
chr3 (12-72)||(13748505-13748565)
chr3 (17-73)||(19420904-19420960)
chr3 (12-72)||(48122825-48122885)
chr3 (12-75)||(30787620-30787683)
chr3 (12-75)||(40497327-40497390)
chr3 (12-74)||(35389748-35389810)
chr3 (12-77)||(10225209-10225274)
chr3 (12-72)||(6134440-6134500)
chr3 (17-77)||(37996874-37996934)
chr3 (12-75)||(1679756-1679819)
chr3 (17-72)||(22289784-22289839)
chr3 (12-75)||(22611432-22611495)
chr3 (12-75)||(45347296-45347357)
chr3 (2-75)||(41742120-41742193)
chr3 (12-72)||(19349648-19349708)
chr3 (2-74)||(22310703-22310775)
chr3 (12-74)||(19879151-19879213)
chr3 (11-73)||(28882735-28882797)
chr3 (12-74)||(29915859-29915921)
chr3 (12-74)||(29965012-29965074)
chr3 (12-74)||(42464965-42465027)
chr3 (2-75)||(38889128-38889200)
chr3 (12-77)||(53192493-53192558)
chr3 (30-74)||(2122702-2122746)
chr3 (12-72)||(47642017-47642077)
chr3 (18-77)||(1528497-1528556)
chr3 (12-75)||(2567445-2567508)
chr3 (12-73)||(52684200-52684261)
chr3 (12-72)||(30226420-30226480)
chr3 (18-62)||(49419245-49419289)
chr3 (9-64)||(983202-983257)
chr3 (9-64)||(13353241-13353296)
chr3 (35-74)||(21157810-21157849)
chr3 (36-75)||(33238720-33238759)
chr3 (21-75)||(25937131-25937184)
chr3 (12-74)||(42229672-42229734)
chr3 (34-74)||(21006565-21006605)
chr3 (12-76)||(52505891-52505954)
[»] chr7 (35 HSPs)
chr7 (2-74)||(11829684-11829756)
chr7 (12-75)||(25969391-25969454)
chr7 (11-74)||(33454065-33454128)
chr7 (12-77)||(40095642-40095707)
chr7 (12-76)||(39520793-39520857)
chr7 (14-74)||(44960195-44960255)
chr7 (12-75)||(48163402-48163465)
chr7 (18-72)||(1043135-1043189)
chr7 (12-74)||(42896997-42897059)
chr7 (12-77)||(27353913-27353978)
chr7 (12-75)||(34238152-34238215)
chr7 (12-74)||(19510518-19510580)
chr7 (9-75)||(26773767-26773833)
chr7 (2-75)||(554928-555001)
chr7 (2-75)||(21409385-21409458)
chr7 (12-72)||(35159862-35159922)
chr7 (28-75)||(47238681-47238728)
chr7 (12-74)||(4291507-4291569)
chr7 (9-75)||(11058346-11058412)
chr7 (19-77)||(16564423-16564481)
chr7 (19-77)||(16601181-16601239)
chr7 (17-67)||(36202841-36202891)
chr7 (12-61)||(9250480-9250529)
chr7 (12-77)||(27398105-27398170)
chr7 (18-75)||(38262993-38263050)
chr7 (12-75)||(24956244-24956308)
chr7 (20-74)||(23079106-23079160)
chr7 (29-74)||(26973062-26973107)
chr7 (12-72)||(34122675-34122735)
chr7 (12-72)||(36758054-36758114)
chr7 (12-72)||(36767578-36767638)
chr7 (12-75)||(16850780-16850843)
chr7 (12-74)||(27555427-27555489)
chr7 (12-74)||(38064590-38064652)
chr7 (16-66)||(44269729-44269779)
[»] chr6 (18 HSPs)
chr6 (12-75)||(27083982-27084045)
chr6 (12-77)||(234301-234366)
chr6 (12-75)||(1036884-1036947)
chr6 (12-72)||(13607843-13607903)
chr6 (9-76)||(3212473-3212540)
chr6 (12-75)||(26327152-26327215)
chr6 (12-74)||(25834554-25834616)
chr6 (9-63)||(32017986-32018040)
chr6 (12-74)||(32130717-32130779)
chr6 (12-62)||(31195927-31195977)
chr6 (2-74)||(6708089-6708161)
chr6 (12-72)||(8356958-8357018)
chr6 (12-72)||(31079612-31079672)
chr6 (17-72)||(19128153-19128208)
chr6 (12-74)||(3299139-3299201)
chr6 (2-76)||(10894621-10894694)
chr6 (2-77)||(7188827-7188899)
chr6 (30-65)||(31741232-31741267)
[»] chr1 (34 HSPs)
chr1 (12-75)||(9781639-9781702)
chr1 (12-78)||(6916932-6916998)
chr1 (9-75)||(34096607-34096673)
chr1 (12-72)||(37104120-37104180)
chr1 (12-76)||(52895771-52895835)
chr1 (12-75)||(28949299-28949362)
chr1 (12-75)||(37346906-37346969)
chr1 (12-75)||(38330424-38330487)
chr1 (17-75)||(2472917-2472975)
chr1 (2-75)||(34432431-34432504)
chr1 (12-76)||(1043223-1043287)
chr1 (12-72)||(20409612-20409672)
chr1 (12-75)||(3426845-3426908)
chr1 (9-75)||(38948729-38948795)
chr1 (21-74)||(3708346-3708399)
chr1 (12-77)||(13013050-13013115)
chr1 (12-76)||(1036455-1036519)
chr1 (12-75)||(8132180-8132243)
chr1 (12-75)||(43189652-43189715)
chr1 (9-74)||(14167082-14167147)
chr1 (17-74)||(29861799-29861856)
chr1 (12-71)||(5984228-5984287)
chr1 (26-65)||(10763668-10763707)
chr1 (17-72)||(10822402-10822457)
chr1 (12-75)||(29167944-29168007)
chr1 (12-75)||(36367750-36367813)
chr1 (9-75)||(30323712-30323778)
chr1 (28-74)||(24849362-24849408)
chr1 (9-75)||(31653457-31653523)
chr1 (18-75)||(2364674-2364731)
chr1 (17-70)||(32381122-32381175)
chr1 (17-70)||(40775997-40776050)
chr1 (34-78)||(14334166-14334209)
chr1 (12-72)||(24590173-24590233)
[»] chr5 (27 HSPs)
chr5 (12-74)||(1795390-1795452)
chr5 (2-75)||(12852116-12852188)
chr5 (12-77)||(30777580-30777645)
chr5 (12-75)||(10656817-10656880)
chr5 (12-75)||(32707889-32707952)
chr5 (12-75)||(39690821-39690884)
chr5 (12-74)||(30918376-30918438)
chr5 (9-74)||(22774552-22774617)
chr5 (2-75)||(26716270-26716343)
chr5 (12-77)||(26795051-26795116)
chr5 (2-75)||(26986010-26986083)
chr5 (12-72)||(33829753-33829813)
chr5 (12-75)||(1639840-1639903)
chr5 (2-72)||(30284655-30284725)
chr5 (12-75)||(6243216-6243279)
chr5 (18-76)||(9792315-9792373)
chr5 (12-70)||(26691618-26691676)
chr5 (12-70)||(26961350-26961408)
chr5 (9-70)||(11906220-11906281)
chr5 (18-63)||(14836390-14836435)
chr5 (12-72)||(7629070-7629130)
chr5 (12-72)||(41392770-41392830)
chr5 (12-75)||(5721985-5722047)
chr5 (12-71)||(17138312-17138370)
chr5 (29-74)||(32624875-32624920)
chr5 (35-74)||(5612523-5612562)
chr5 (18-75)||(32728773-32728830)
[»] scaffold0005 (1 HSPs)
scaffold0005 (12-77)||(44648-44713)
[»] chr4 (26 HSPs)
chr4 (12-77)||(14795018-14795083)
chr4 (6-73)||(3403627-3403694)
chr4 (12-74)||(53322335-53322397)
chr4 (12-77)||(5834825-5834890)
chr4 (2-75)||(47607107-47607179)
chr4 (12-72)||(8064167-8064227)
chr4 (17-72)||(1176981-1177036)
chr4 (12-71)||(19738698-19738757)
chr4 (12-75)||(28376993-28377056)
chr4 (12-75)||(52122927-52122990)
chr4 (12-74)||(51674856-51674918)
chr4 (19-72)||(36511999-36512052)
chr4 (18-75)||(41145609-41145666)
chr4 (12-72)||(5325779-5325839)
chr4 (12-72)||(38492317-38492377)
chr4 (2-62)||(52721274-52721334)
chr4 (18-75)||(46431997-46432053)
chr4 (12-72)||(40694070-40694130)
chr4 (28-75)||(10257697-10257744)
chr4 (12-75)||(42472627-42472690)
chr4 (12-73)||(31946263-31946324)
chr4 (21-70)||(51858834-51858883)
chr4 (12-77)||(55901197-55901262)
chr4 (29-72)||(2586336-2586379)
chr4 (9-63)||(27981905-27981959)
chr4 (12-72)||(44121900-44121960)
[»] scaffold0640 (1 HSPs)
scaffold0640 (12-76)||(8150-8214)
[»] scaffold0250 (1 HSPs)
scaffold0250 (12-77)||(5507-5572)
[»] scaffold0177 (1 HSPs)
scaffold0177 (12-77)||(25588-25653)
[»] scaffold0112 (1 HSPs)
scaffold0112 (12-72)||(42123-42183)
[»] scaffold0285 (1 HSPs)
scaffold0285 (12-70)||(13252-13310)
[»] scaffold0406 (1 HSPs)
scaffold0406 (15-75)||(13863-13923)
[»] scaffold0060 (1 HSPs)
scaffold0060 (12-75)||(30502-30565)


Alignment Details
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 13422278 - 13422203
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||||| || |||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  13422278 atcaggcaggtatcggtgcaggatatgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagct 13422203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 32877497 - 32877434
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  32877497 tatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttcacag 32877434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 6028550 - 6028484
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  6028550 agatatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 6028484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 2872968 - 2873037
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagctgcaa 81  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  2872968 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacaactgcaa 2873037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 22201395 - 22201459
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagc 76  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||    
T  22201395 tatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcgggacttcacagc 22201459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 37372319 - 37372255
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagc 76  Q
    ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  37372319 tatcagtgcaggatacgcaggagatacgatacgtcatccattttgaagtatcggagcttcacagc 37372255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 34901440 - 34901503
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  34901440 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 34901503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 36483495 - 36483432
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  36483495 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 36483432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 4246000 - 4245937
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| ||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||    
T  4246000 tatcggtgcaggatatgcaggggatacggtacgtcatctattttgaagcatcggggcttcacag 4245937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 16384677 - 16384614
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| ||||||||||  ||||||||||| ||||||| |||||||||||||||||||||||||||    
T  16384677 tatcggtgcaggatactcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 16384614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 28876624 - 28876687
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||  ||||||| |||||||||||||||||||||||||||    
T  28876624 tatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttcacag 28876687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 32759433 - 32759370
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  32759433 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgaggcttcacag 32759370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 43771762 - 43771825
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||| ||||||| ||||||||||||||||||| |||||||    
T  43771762 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggtttcacag 43771825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 27886250 - 27886188
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| ||||||||||||||||| |||| |||||||| |||||||||||||||||| |||||||    
T  27886250 tatcggtgcaggatatgcagggaatacaatacgtcatccattttgaagtatcgggacttcaca 27886188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 27944908 - 27944846
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| ||||||||||||||||| |||| |||||||| |||||||||||||||||| |||||||    
T  27944908 tatcggtgcaggatatgcagggaatacaatacgtcatccattttgaagtatcgggacttcaca 27944846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 40412490 - 40412433
Alignment:
Q  17 gtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||||||||| |||||||||||||||| ||| |||||||||||||| |||||||||||    
T  40412490 gtgcaggatacgcaggggatacgatacatcatccattttgaagtattggggcttcaca 40412433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 19436334 - 19436272
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| |||||||||| ||| |||||||| ||||||| ||||||||||||||||| ||||||||    
T  19436334 tatcggtgcaggatacgcaagggatacggtacgtcatccattttgaagtatcggagcttcaca 19436272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 19572483 - 19572421
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| |||||||||| ||| |||||||| ||||||| ||||||||||||||||| ||||||||    
T  19572483 tatcggtgcaggatacgcaagggatacggtacgtcatccattttgaagtatcggagcttcaca 19572421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 19948054 - 19948112
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggctt 70  Q
    |||| |||||||||| |||||||||| ||||||||| ||||||||||||||| ||||||    
T  19948054 tatcggtgcaggatacgcaggggatatgatacgtcatccattttgaagtatcagggctt 19948112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 12580611 - 12580676
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| |||||||||| ||||| |||||| ||| ||| | |||||||||||||||||||||||||||    
T  12580611 tatcggtgcaggatacgcaggagatacggtacatcatctattttgaagtatcggggcttcacagct 12580676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 32638914 - 32638974
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| |||||||||||| ||||||| ||||||||||||||| | ||||||    
T  32638914 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcagagcttca 32638974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 37668637 - 37668577
Alignment:
Q  17 gtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    ||||| |||| |||||| ||||| ||||||| ||||||||||||||||||| |||||||||    
T  37668637 gtgcaagatacgcagggaatacggtacgtcatccattttgaagtatcggggtttcacagct 37668577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 45217278 - 45217342
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagc 76  Q
    |||| |||||||||| ||||||||||| |||  ||| ||||||| ||||||||||||||||||||    
T  45217278 tatcggtgcaggatacgcaggggatacaatatatcatccattttaaagtatcggggcttcacagc 45217342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 5818369 - 5818424
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcgggg 67  Q
    |||| |||||||||| ||| | |||||||||||||| |||||||||||||||||||    
T  5818369 tatcggtgcaggatacgcaagtgatacgatacgtcatccattttgaagtatcgggg 5818424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 12357954 - 12357884
Alignment:
Q  6 ggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||||||||| ||||||||||  ||| ||||||| ||||||| ||||||||||||||| |||||||| ||||    
T  12357954 ggaagatatcggtgcaggatacacagaggatacg-tacgtcatccattttgaagtatccgggcttcatagct 12357884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 12359082 - 12359012
Alignment:
Q  6 ggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||||||||| ||||||||||  ||| ||||||| ||||||| ||||||||||||||| |||||||| ||||    
T  12359082 ggaagatatcggtgcaggatacacagaggatacg-tacgtcatccattttgaagtatccgggcttcatagct 12359012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 32744 - 32678
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||||||  |||||||||  ||| ||||| ||||||||||||||||| |||||||||||||| ||||    
T  32744 agatatcgatgcaggatacacagaggatatgatacgtcaaccattttaaagtatcggggctttacag 32678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 25022185 - 25022123
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| |||||||||| ||||| |||||| || |||| |||||||||||||| |||||||||||    
T  25022185 tatcggtgcaggatacgcaggagatacggtatgtcatccattttgaagtattggggcttcaca 25022123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 29355677 - 29355620
Alignment:
Q  18 tgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||||||||  ||||||||| |||| |||| ||||||||||||||| |||||||||||    
T  29355677 tgcaggatacccaggggatatgatatgtcatccattttgaagtatcagggcttcacag 29355620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 32424981 - 32424928
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcgg 65  Q
    |||| |||||||||| ||| |||||||| ||||||| |||||||||||||||||    
T  32424981 tatcggtgcaggatacgcaagggatacggtacgtcatccattttgaagtatcgg 32424928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 27968163 - 27968103
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| ||||||||||||||||| |||| |||||||| | ||||| |||||||||| |||||    
T  27968163 tatcggtgcaggatatgcagggaatacaatacgtcatctatttttaagtatcgggacttca 27968103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 28025149 - 28025089
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| ||||||||||||||||| |||| |||||||| | ||||| |||||||||| |||||    
T  28025149 tatcggtgcaggatatgcagggaatacaatacgtcatctatttttaagtatcgggacttca 28025089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 28737299 - 28737255
Alignment:
Q  28 gcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    ||||||||||| |||||||| |||||||||| |||||||||||||    
T  28737299 gcaggggatacaatacgtcatccattttgaaatatcggggcttca 28737255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 38388727 - 38388664
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||| |||||| ||||  || ||||||||||||||||||| |||||||    
T  38388727 tatcggtgcaggatacgcagaggatacaatacagcatccattttgaagtatcggggtttcacag 38388664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 7411690 - 7411636
Alignment:
Q  18 tgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||||||||  ||| |||||||||||| || ||||||||||||||||| ||||||    
T  7411690 tgcaggatacacagtggatacgatacgccatccattttgaagtatcggagcttca 7411636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 20182430 - 20182380
Alignment:
Q  16 agtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggg 66  Q
    ||||||||||||||| |||||||  ||||||| |||| |||||||||||||    
T  20182430 agtgcaggatatgcacgggataccgtacgtcatccatcttgaagtatcggg 20182380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 41099366 - 41099406
Alignment:
Q  34 gatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||| |||| ||| ||||||||||||||||||||||||||    
T  41099366 gatacaatacatcatccattttgaagtatcggggcttcaca 41099406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 20536835 - 20536772
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20536835 tatcggtgcaggatatgcaggggatacgatacgtcatccattttgaagtatcggggcttcacag 20536772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 28746710 - 28746773
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28746710 tatcggtgcaggatacgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 28746773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 1776494 - 1776557
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1776494 tatcggtgcagaatacgcaagggatacgatacgtcaaccattttgaagtatcggggcttcacag 1776557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 7876774 - 7876711
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  7876774 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 7876711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 38602380 - 38602443
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  38602380 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 38602443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 4170550 - 4170623
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||||| || |||| |||||||||| |||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  4170550 atcaggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggagcttcacag 4170623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 3563911 - 3563851
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    ||||||||||| ||||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  3563911 tatcagtgcagaatatgtaggggatacaatacgtcatccattttgaagtatcggggcttca 3563851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 7807443 - 7807495
Alignment:
Q  23 gatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  7807443 gatacgcaggggatacgatacgtcatccattttgaagtatcggggcttcacag 7807495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 33324878 - 33324814
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagc 76  Q
    |||| |||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  33324878 tatcggtgcaggatacgcaggggatacggtacatcatccattttgaagtatcggggcttcacagc 33324814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 6497707 - 6497769
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||| |||||||    
T  6497707 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgggacttcaca 6497769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 1005573 - 1005512
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcac 73  Q
    |||| |||||||||| |||||||||||||||||||| ||||||||||||||| | |||||||    
T  1005573 tatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcagagcttcac 1005512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 2319335 - 2319274
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcac 73  Q
    |||| ||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||||    
T  2319335 tatcggtgcaagatacgcaggggatacgatacgtcatccattttgaagtatcggggtttcac 2319274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 45159361 - 45159418
Alignment:
Q  17 gtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  45159361 gtgcaagatacgcaagggatacgatacgtcatccattttgaagtatcggggcttcaca 45159418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 40308955 - 40309019
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagc 76  Q
    |||| |||||||||| ||| |||||||| ||||||| | ||||||||||||||||||||||||||    
T  40308955 tatcggtgcaggatacgcatgggatacggtacgtcatctattttgaagtatcggggcttcacagc 40309019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 6124233 - 6124170
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| ||||||||||  |||||||||| |||||||| ||||||| |||||||||||||||||||    
T  6124233 tatcggtgcaggatacacaggggatacaatacgtcatccattttaaagtatcggggcttcacag 6124170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 14217209 - 14217272
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    ||||||| |||||| ||| ||||||||||| |||||||| ||||||||||||||||| ||||||    
T  14217209 agatatcggtgcagaatacgcaggggatacaatacgtcatccattttgaagtatcggagcttca 14217272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 16561860 - 16561797
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||| ||| ||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  16561860 tatcggtgcagaatacgcaagggatacggtacgtcatccattttgaagtatcggggcttcacag 16561797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 18301032 - 18300969
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||| |||  ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  18301032 tatcggtgcagaatacacaggggatacgatacgtcatccattttgaagtatcagggcttcacag 18300969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 31236249 - 31236307
Alignment:
Q  17 gtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||||||||| ||||||||||| |||||| | ||||||| |||||||||||||||||||    
T  31236249 gtgcaggatacgcaggggatacaatacgttatccattttaaagtatcggggcttcacag 31236307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 35342387 - 35342317
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||||| || |||| |||||||||| ||| |||||||| ||||||| |||||||||||||||||| |||||    
T  35342387 atcaggtaggtatcggtgcaggatacgcaagggatacggtacgtcatccattttgaagtatcgggacttca 35342317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 37134353 - 37134414
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggctt 70  Q
    |||||||||||||||||| |||| ||||||| ||||||| | ||||||||||||| ||||||    
T  37134353 agatatcagtgcaggatacgcagaggatacggtacgtcatctattttgaagtatctgggctt 37134414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 4355385 - 4355325
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||| ||| |||||| ||||||||||||| |||||||||||||||| |||||||    
T  4355385 tatcggtgcagaatacgcagggaatacgatacgtcatccattttgaagtatcgaggcttca 4355325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 24585589 - 24585530
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||    
T  24585589 tatcggtgcaggatacgcaggg-atacgatacatcatccattttgaagtatcggggcttca 24585530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 21104545 - 21104482
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    ||||||| ||||| |||| |||| ||||||||||||||| ||||||| |||||| |||||||||    
T  21104545 agatatcggtgcaagatacgcagaggatacgatacgtcatccattttaaagtattggggcttca 21104482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 22484330 - 22484267
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||||||  ||||||||| |||||| ||||| ||| ||| ||||||||||||||||||||||||    
T  22484330 agatatcgatgcaggatacgcagggaatacggtacatcatccattttgaagtatcggggcttca 22484267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 5588146 - 5588104
Alignment:
Q  33 ggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||||||||||| ||||||||||||||||| |||||||||    
T  5588146 ggatacgatacgtcatccattttgaagtatcggagcttcacag 5588104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 34146250 - 34146180
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||||| ||||||| |||||| ||| ||||  |||||||||||||| ||||||| ||||||||| ||||||    
T  34146250 atcaggcagatatcggtgcagaatacgcagaagatacgatacgtcatccattttaaagtatcggagcttca 34146180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 44156651 - 44156597
Alignment:
Q  18 tgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||| ||||||||||||||| |||| ||||||||||||||||||| ||||    
T  44156651 tgcatgatacgcaggggatacgatatgtcatccattttgaagtatcggggattca 44156597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 8482972 - 8483029
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggg 66  Q
    ||||||| |||||||||| |||  |||||||||||||||  |||||||||||||||||    
T  8482972 agatatcggtgcaggatacgcaaaggatacgatacgtcattcattttgaagtatcggg 8483029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 14824211 - 14824146
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||||| ||||| |||| ||| | |||||||||||||| | |||||||||||||||| |||||||    
T  14824211 agatatcggtgcatgatacgcaagagatacgatacgtcatctattttgaagtatcgggacttcaca 14824146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 12819354 - 12819298
Alignment:
Q  19 gcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||||  ||||||||||| ||| ||| ||||||||||||||| |||||||||||    
T  12819354 gcaggatacacaggggatacggtacatcatccattttgaagtatcagggcttcacag 12819298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 22570997 - 22570937
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| |||| ||||||| ||||||| | ||||||||||||| ||||||||    
T  22570997 tatcggtgcaggatacgcagaggatacggtacgtcatctattttgaagtatctgggcttca 22570937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 43214635 - 43214567
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||||||  |||||||||  || |||||||||||||||| ||||||||||||||| || ||||| ||||    
T  43214635 agatatcgatgcaggatacacatgggatacgatacgtcatccattttgaagtatctggacttcagagct 43214567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 4561848 - 4561785
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| ||||||||||  || || ||||||||||||| |||||||||||||| || |||||||||    
T  4561848 tatcggtgcaggatacacaaggaatacgatacgtcatccattttgaagtattggagcttcacag 4561785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 25933620 - 25933565
Alignment:
Q  17 gtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    ||||| |||| |||||||||||||||| ||| ||||||||||||||  ||||||||    
T  25933620 gtgcatgatacgcaggggatacgatacatcatccattttgaagtatatgggcttca 25933565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 27839 - 27904
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  27839 tatcggtgcaggatatgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagct 27904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 52121236 - 52121175
Alignment:
Q  16 agtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52121236 agtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttcacagct 52121175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 28704787 - 28704724
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||    
T  28704787 tatcagtgcaggatatgcaggggatacggtacgtcatccattttaaagtatcggggcttcacag 28704724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 55269076 - 55269134
Alignment:
Q  18 tgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagc 76  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  55269076 tgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttcacagc 55269134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 7327772 - 7327707
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  7327772 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagct 7327707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 13748505 - 13748565
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  13748505 tatcggtgcaggatacgcagaggatacgatacgtcaaccattttgaagtatcggggcttca 13748565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 19420960 - 19420904
Alignment:
Q  17 gtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcac 73  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  19420960 gtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttcac 19420904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 48122885 - 48122825
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  48122885 tatcggtgcaggatatgcaggggatacggtacgtcatccattttgaagtatcggggcttca 48122825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 30787620 - 30787683
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||||||||    
T  30787620 tatcagtacaggatacgcaggggatacgatacgtcatcgattttgaagtatcggggcttcacag 30787683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 40497390 - 40497327
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  40497390 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 40497327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 35389810 - 35389748
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  35389810 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 35389748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 10225209 - 10225274
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| |||||||||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||    
T  10225209 tatcggtgcaggatacgcaggggatacgatacgtcatccattttaaagtatcagggcttcacagct 10225274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 6134440 - 6134500
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||    
T  6134440 tatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcagggcttca 6134500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 37996874 - 37996934
Alignment:
Q  17 gtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||||||||| |||||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  37996874 gtgcaggatacgcaggggatacggtacgtcatccattttaaagtatcggggcttcacagct 37996934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 1679756 - 1679819
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| ||||||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||    
T  1679756 tatcggtgcaggatatgcagtggatacggtacgttatccattttgaagtatcggggcttcacag 1679819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 22289784 - 22289839
Alignment:
Q  17 gtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||| |||||||    
T  22289784 gtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcgaggcttca 22289839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 22611432 - 22611495
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||| | |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  22611432 tatcggtgcaggaaacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 22611495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 45347357 - 45347296
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||    
T  45347357 tatcagtgcaggata-gcaggggatacgata-gtcaaccattttgaagtatcggagcttcacag 45347296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 41742120 - 41742193
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||||| |||| ||||||||||  ||| |||||| |||||||| ||||||||||||||||| |||||||||    
T  41742120 atcaggaaggtatcggtgcaggatacacagaggatacaatacgtcatccattttgaagtatcggcgcttcacag 41742193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 19349648 - 19349708
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||||||||||| ||  |||| |||||||||||||||||||||||||||||||| ||||||    
T  19349648 tatcagtgcaggttacacaggagatacgatacgtcaaccattttgaagtatcggagcttca 19349708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 22310775 - 22310703
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||||| || |||| ||||||||||  ||||||||||| ||||||| ||||| ||||||||||||||||||||    
T  22310775 atcaggcaggtatcggtgcaggatacacaggggatacggtacgtcatccattgtgaagtatcggggcttcaca 22310703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 19879151 - 19879213
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||| | |||||||||    
T  19879151 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtattgcggcttcaca 19879213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 28882735 - 28882797
Alignment:
Q  11 atatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcac 73  Q
    ||||| ||||| |||| |||||||||||| ||||||| ||||||||||||||||| |||||||    
T  28882735 atatcggtgcatgatacgcaggggatacggtacgtcatccattttgaagtatcggagcttcac 28882797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 29915921 - 29915859
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| ||||| |||| |||||||||||||||||||| | |||||||||||||||| |||||||    
T  29915921 tatcggtgcatgatacgcaggggatacgatacgtcatctattttgaagtatcgggacttcaca 29915859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 29965074 - 29965012
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| ||||| |||| |||||||||||||||||||| | |||||||||||||||| |||||||    
T  29965074 tatcggtgcatgatacgcaggggatacgatacgtcatctattttgaagtatcgggacttcaca 29965012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 42464965 - 42465027
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| |||||||||| |||| ||||||  ||||||| ||||||||||||||||||||||||||    
T  42464965 tatcggtgcaggatacgcagaggatacagtacgtcatccattttgaagtatcggggcttcaca 42465027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 38889128 - 38889200
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||||| ||||||| |||||||||  | || ||||||||||||||| ||||||||||||||| |||||||||||    
T  38889128 atcaggcagatatcggtgcaggatc-gtagaggatacgatacgtcatccattttgaagtatcagggcttcacag 38889200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 53192558 - 53192493
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| ||||||||||  ||||| ||||| ||||||| |||||||||||||||||||||||| ||||    
T  53192558 tatcggtgcaggatactcagggtatacggtacgtcatccattttgaagtatcggggcttcagagct 53192493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 2122746 - 2122702
Alignment:
Q  30 aggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||    
T  2122746 aggggatacaatacgtcatccattttgaagtatcggggcttcaca 2122702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 47642077 - 47642017
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| ||| |||||||| ||||||| |||||||||||||||| |||||||    
T  47642077 tatcggtgcaggatacgcatgggatacggtacgtcatccattttgaagtatcgaggcttca 47642017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 1528556 - 1528497
Alignment:
Q  18 tgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| |||| |||||||||| ||||||||| ||||||||||||||||| |||||| ||||    
T  1528556 tgcatgatacgcaggggatatgatacgtcatccattttgaagtatcggagcttcagagct 1528497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 2567445 - 2567508
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||  ||||||||||||| ||||||||||||||||||  |||||||    
T  2567445 tatcggtgcaggatacgcaggaaatacgatacgtcatccattttgaagtatcgggatttcacag 2567508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 52684261 - 52684200
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcac 73  Q
    |||| |||||||||| ||| | |||||||||||||| | ||||||||||||||| |||||||    
T  52684261 tatcggtgcaggatacgcatgagatacgatacgtcatctattttgaagtatcggagcttcac 52684200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 30226480 - 30226420
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| |||| |||||||||| |||| ||||||||||||||  ||||||||    
T  30226480 tatcggtgcaggatacgcagaggatacgataagtcatccattttgaagtatatgggcttca 30226420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 49419289 - 49419245
Alignment:
Q  18 tgcaggatatgcaggggatacgatacgtcaaccattttgaagtat 62  Q
    ||||||||| ||| |||||||||||||||| ||||||||||||||    
T  49419289 tgcaggatacgcaagggatacgatacgtcatccattttgaagtat 49419245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 983257 - 983202
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcg 64  Q
    |||||||||||||  |||  ||||||||||||||||||| |||||||||| |||||    
T  983257 agatatcagtgcaaaatacacaggggatacgatacgtcatccattttgaattatcg 983202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 13353241 - 13353296
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcg 64  Q
    ||||||| | |||||||| ||||| |||||||||||||| ||||||| ||||||||    
T  13353241 agatatcggcgcaggatacgcaggagatacgatacgtcatccattttaaagtatcg 13353296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 21157810 - 21157849
Alignment:
Q  35 atacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  21157810 atacgatacgtcatccattttgaagtatctgggcttcaca 21157849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 33238759 - 33238720
Alignment:
Q  36 tacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  33238759 tacggtacgtcatccattttgaagtatcggggcttcacag 33238720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 25937131 - 25937184
Alignment:
Q  21 aggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||||| ||||| |||||||||||||| ||||||| ||||||| |||||||||||    
T  25937131 aggatacgcaggagatacgatacgtcatccattttaaagtatc-gggcttcacag 25937184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 42229734 - 42229672
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| |||||||||| ||||||||||  |||||||| | |||||||||||| || ||||||||    
T  42229734 tatcggtgcaggatacgcaggggatataatacgtcatctattttgaagtattggagcttcaca 42229672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 21006565 - 21006605
Alignment:
Q  34 gatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| |||||||||  |||||||||||||||||||||||||    
T  21006565 gatatgatacgtcattcattttgaagtatcggggcttcaca 21006605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 52505891 - 52505954
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagc 76  Q
    |||| |||||||||| |||||| ||||  ||| ||| ||||||| ||||||||||||||||||||    
T  52505891 tatcggtgcaggatacgcaggg-atacagtacatcatccatttttaagtatcggggcttcacagc 52505954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 11829756 - 11829684
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||||| ||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  11829756 atcaggcagatatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 11829684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 25969454 - 25969391
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  25969454 tatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttcacag 25969391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 33454128 - 33454065
Alignment:
Q  11 atatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||    
T  33454128 atatcagtgcaggatacgcaggggatacgatacgtcatccattttgaaatatcggggcttcaca 33454065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 40095707 - 40095642
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  40095707 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagct 40095642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 39520857 - 39520793
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagc 76  Q
    |||| |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  39520857 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagc 39520793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 44960195 - 44960255
Alignment:
Q  14 tcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||    
T  44960195 tcagtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggagcttcaca 44960255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 48163465 - 48163402
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  48163465 tatcggtgcaggatacgcaggggatacggtacgtcacccattttgaagtatcggggcttcacag 48163402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 1043135 - 1043189
Alignment:
Q  18 tgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  1043135 tgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttca 1043189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 42897059 - 42896997
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  42897059 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 42896997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 27353978 - 27353913
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| |||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||||    
T  27353978 tatcggtgcaggatacgcagggaatacggtacgtcatccattttgaagtatcggggcttcacagct 27353913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 34238215 - 34238152
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||| ||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  34238215 tatcggtgcagaatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 34238152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 19510580 - 19510518
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||||||||| ||||  ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  19510580 tatcagtgcatgatacacaggggatacgatacgtcatccattttgaagtatcggggtttcaca 19510518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 26773767 - 26773833
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||| |||||||||| ||| |||||||||||||||| | ||||| |||||||||||||||||||    
T  26773767 agatatcggtgcaggatacgcaagggatacgatacgtcatcaattttaaagtatcggggcttcacag 26773833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 554928 - 555001
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||||| |||| ||||||||||  ||||||||||||||||||| | |||||  ||||||||||||||||||    
T  554928 atcaggaaggtatcggtgcaggatacacaggggatacgatacgtcatctattttagagtatcggggcttcacag 555001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 21409458 - 21409385
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||||| || |||||||||||||||| |||| |||||||||||||| ||||||| ||||||  |||||||||||    
T  21409458 atcaggcaggtatcagtgcaggatatacaggagatacgatacgtcatccatttttaagtatgagggcttcacag 21409385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 35159922 - 35159862
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||| |||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  35159922 tatcggtgcagaatatgcaggggatacgatacatcatccattttgaagtatcggagcttca 35159862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 47238681 - 47238728
Alignment:
Q  28 gcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  47238681 gcaggggatacgatacatcatccattttgaagtatcggggcttcacag 47238728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 4291569 - 4291507
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| |||||||||| |||||||||||| ||| ||| ||||||| ||||||||||||||||||    
T  4291569 tatcggtgcaggatacgcaggggatacggtacatcatccattttaaagtatcggggcttcaca 4291507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 11058412 - 11058346
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||| |||||||||| |||||||||||| ||||||| ||||||||||||| | || ||||||||    
T  11058412 agatatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtacctggacttcacag 11058346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 16564423 - 16564481
Alignment:
Q  19 gcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||||||| |||||||||||| ||||||| |||||||||||||||||| ||||| ||||    
T  16564423 gcaggatacgcaggggatacggtacgtcatccattttgaagtatcgggacttcagagct 16564481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 16601239 - 16601181
Alignment:
Q  19 gcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||||||| |||||||||||| ||||||| |||||||||||||||||| ||||| ||||    
T  16601239 gcaggatacgcaggggatacggtacgtcatccattttgaagtatcgggacttcagagct 16601181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 36202841 - 36202891
Alignment:
Q  17 gtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcgggg 67  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||||||||    
T  36202841 gtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgggg 36202891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 9250480 - 9250529
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagta 61  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||    
T  9250480 tatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagta 9250529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 27398105 - 27398170
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    ||||||||||||||| |||||||||||  ||||||| ||||||| ||||||| |||||||| ||||    
T  27398105 tatcagtgcaggatacgcaggggatacagtacgtcatccattttaaagtatccgggcttcatagct 27398170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 38263050 - 38262993
Alignment:
Q  18 tgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||||| |||| | ||||| ||||||| |||||||||||||||||||||||||||    
T  38263050 tgcaggatacgcagagaatacggtacgtcatccattttgaagtatcggggcttcacag 38262993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 24956308 - 24956244
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatc-ggggcttcacag 75  Q
    ||||| |||| |||||| |||||||||||||||||| | ||||||||||||| ||||||||||||    
T  24956308 tatcaatgcatgatatgtaggggatacgatacgtcatcaattttgaagtatctggggcttcacag 24956244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 23079106 - 23079160
Alignment:
Q  20 caggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||||| |||||||||||| || |||| ||||||||||||||||||||| ||||    
T  23079106 caggatacgcaggggatacggtatgtcatccattttgaagtatcggggctacaca 23079160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 26973107 - 26973062
Alignment:
Q  29 caggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  26973107 caggggatacgatacgtcaactattttaaagtatcagggcttcaca 26973062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 34122675 - 34122735
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| |||| ||||||| ||||||| |||||||||||||||  |||||||    
T  34122675 tatcggtgcaggatacgcagaggatacggtacgtcatccattttgaagtatctaggcttca 34122735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 36758054 - 36758114
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||| ||| |||||||||||||||| |||  ||||||||||||| |||||||||    
T  36758054 tatcggtgcagaatacgcaggggatacgatacatcattcattttgaagtattggggcttca 36758114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 36767578 - 36767638
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||| ||| |||||||||||||||| |||  ||||||||||||| |||||||||    
T  36767578 tatcggtgcagaatacgcaggggatacgatacatcattcattttgaagtattggggcttca 36767638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 16850843 - 16850780
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| ||||| ||||  ||||| ||||| ||||||| |||||||||| ||||||||||||||||    
T  16850843 tatcggtgcatgatacacagggaatacggtacgtcatccattttgaaatatcggggcttcacag 16850780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 27555427 - 27555489
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| |||||| ||| |||| | ||||| ||||||| ||||||||||||||| ||||||||||    
T  27555427 tatcggtgcagaatacgcagagaatacggtacgtcatccattttgaagtatcagggcttcaca 27555489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 38064652 - 38064590
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||||||||| |||| ||| | |||||| || |||| ||||||| ||||||||||||||||||    
T  38064652 tatcagtgcatgatacgcatgagatacgttatgtcatccattttaaagtatcggggcttcaca 38064590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 44269779 - 44269729
Alignment:
Q  16 agtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggg 66  Q
    ||||||||||||||| |||||||  ||||||| |||| |||||||||||||    
T  44269779 agtgcaggatatgcacgggataccgtacgtcatccatcttgaagtatcggg 44269729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 27084045 - 27083982
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  27084045 tatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttcacag 27083982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 234366 - 234301
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  234366 tatcggtgcaggatacgcaggagatacgatacgtcaaccattttgaagtatcggggcttcagagct 234301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 1036884 - 1036947
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  1036884 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 1036947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 13607843 - 13607903
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||| ||||    
T  13607843 tatcagtgcaggatatgcagaggatacgatacgtcatccattttgaagtatcagggattca 13607903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 3212540 - 3212473
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagc 76  Q
    ||||||| ||||||||||  || || ||||||||||||| ||||||||||||||||||||||||||||    
T  3212540 agatatcggtgcaggatacacaaggaatacgatacgtcatccattttgaagtatcggggcttcacagc 3212473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 26327215 - 26327152
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| ||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||    
T  26327215 tatcggtgcaggatacacaggagatacgatacgtcatccattttgaagtatcggggcttcacag 26327152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 25834554 - 25834616
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||| ||||||    
T  25834554 tatcagtgcaggatacgcacgggatacgatacgtcatccaatttgaagtatcggggtttcaca 25834616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 32018040 - 32017986
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatc 63  Q
    ||||||| |||||||||| |||||||||||||||||||| |||||||||||||||    
T  32018040 agatatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatc 32017986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 32130717 - 32130779
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||||||||||||| |||||||||||| |||||||  |||||| ||||||||||||||||||    
T  32130717 tatcagtgcaggatacgcaggggatacggtacgtcattcattttaaagtatcggggcttcaca 32130779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 31195927 - 31195977
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtat 62  Q
    |||| |||||||||| |||||||||||||||||||| ||||||||||||||    
T  31195927 tatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtat 31195977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 6708089 - 6708161
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||||||| |||| ||||| ||||  |||||||||| ||| |||| ||||||| ||||||||||||||||||    
T  6708089 atcaggaaggtatcggtgcatgatacacaggggatacaatatgtcatccattttaaagtatcggggcttcaca 6708161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 8357018 - 8356958
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| |||||||||||| ||||||| ||||||||||||||| || |||||    
T  8357018 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcaggacttca 8356958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 31079672 - 31079612
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| ||||||||||| |||||||| ||||||| ||||||||| ||||||    
T  31079672 tatcggtgcaggatacgcaggggatacaatacgtcatccattttaaagtatcggagcttca 31079612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 19128208 - 19128153
Alignment:
Q  17 gtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    ||||||||||  ||||||||||||||||||||||||||| |||||| || ||||||    
T  19128208 gtgcaggatacacaggggatacgatacgtcaaccattttaaagtattggagcttca 19128153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 3299201 - 3299139
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| ||||||||||||||| ||||||| ||| ||| | ||||||||||||| ||||||||||    
T  3299201 tatcggtgcaggatatgcagaggatacggtacatcatctattttgaagtatcagggcttcaca 3299139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 10894621 - 10894694
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagc 76  Q
    |||||| || |||| ||||| |||| || ||||||||| ||||||| ||||||||||||||| ||||||||||||    
T  10894621 atcaggcaggtatcggtgcatgatacgc-ggggatacggtacgtcatccattttgaagtatcagggcttcacagc 10894694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 7188827 - 7188899
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||||| || |||| |||||||||| |||||||||||| ||| ||   ||||||||||||||||||||||| ||||    
T  7188827 atcaggcaggtatcggtgcaggatacgcaggggatacggtacatc---cattttgaagtatcggggcttcagagct 7188899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 31741232 - 31741267
Alignment:
Q  30 aggggatacgatacgtcaaccattttgaagtatcgg 65  Q
    |||||||||||||||||| |||||||||||||||||    
T  31741232 aggggatacgatacgtcatccattttgaagtatcgg 31741267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 9781702 - 9781639
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  9781702 tatcggtgcaggatacgcaggggatacgatacgtcaaccattttgaagtatcagggcttcacag 9781639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 6916932 - 6916998
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagctg 78  Q
    |||| |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  6916932 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagctg 6916998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 34096607 - 34096673
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  34096607 agatatcggtgcaggatacgcaggggatacgatacgtcaatcattttgaaatatcggggcttcacag 34096673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 37104180 - 37104120
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  37104180 tatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttca 37104120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 52895771 - 52895835
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagc 76  Q
    |||| |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  52895771 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagc 52895835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 28949299 - 28949362
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  28949299 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 28949362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 37346906 - 37346969
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  37346906 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 37346969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 38330487 - 38330424
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  38330487 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 38330424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 2472917 - 2472975
Alignment:
Q  17 gtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||    
T  2472917 gtgcaggatatgcaggggatacgatacgtcatctattttgaagtatcggagcttcacag 2472975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 34432431 - 34432504
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||||| ||||| ||||||| |||| ||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  34432431 atcaggcagataccagtgcatgatacgcaggggatacaatacgtcatccattttgaagtatcggagcttcacag 34432504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 1043287 - 1043223
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagc 76  Q
    |||| |||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  1043287 tatcggtgcaggatacgcaggggatacggtacatcatccattttgaagtatcggggcttcacagc 1043223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 20409612 - 20409672
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||    
T  20409612 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 20409672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 3426908 - 3426845
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||    
T  3426908 tatcggtgcaggatacgcaggggatacaatacgtcatccattttaaagtatcggggcttcacag 3426845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 38948795 - 38948729
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||| |||||||||| |||||||||||| ||||||| ||||||| ||||||||| |||||||||    
T  38948795 agatatcggtgcaggatacgcaggggatacggtacgtcatccattttaaagtatcggagcttcacag 38948729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 3708346 - 3708399
Alignment:
Q  21 aggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  3708346 aggatatgcagaggatacgatacgtcatccattttgaagtatcggggtttcaca 3708399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 13013050 - 13013115
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||||||||| ||||  |||||||||||||| |||| |||||||||||||| ||||||||||||||    
T  13013050 tatcagtgcatgatacacaggggatacgatatgtcatccattttgaagtattggggcttcacagct 13013115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 1036519 - 1036455
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagc 76  Q
    |||| |||||||||| |||||||||||| ||||||| ||||||||||||||  ||||||||||||    
T  1036519 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatgagggcttcacagc 1036455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 8132243 - 8132180
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||| ||||||| | ||||||||||||||| |||||||||    
T  8132243 tatcggtgcaggatacgcaggggatacggtacgtcatctattttgaagtatcggagcttcacag 8132180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 43189715 - 43189652
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||| ||| ||| |||||||||||||||||| ||||||||    
T  43189715 tatcggtgcaggatacgcaggggatacggtacatcatccattttgaagtatcgggtcttcacag 43189652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 14167147 - 14167082
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||||| |||||||||| ||||| ||||||||| |||| |||||||||||||||| | |||||||    
T  14167147 agatatcggtgcaggatacgcaggtgatacgataagtcatccattttgaagtatcgagacttcaca 14167082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 29861856 - 29861799
Alignment:
Q  17 gtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||| |||| | ||| ||||| |||||||||||||||||||||||||||||||||||    
T  29861856 gtgcatgatacgtaggagatacaatacgtcaaccattttgaagtatcggggcttcaca 29861799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 5984287 - 5984228
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttc 71  Q
    |||| |||||| ||| |||||||||||  ||||||| |||||||||||||||||||||||    
T  5984287 tatcggtgcagaatacgcaggggatacagtacgtcatccattttgaagtatcggggcttc 5984228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 10763707 - 10763668
Alignment:
Q  26 atgcaggggatacgatacgtcaaccattttgaagtatcgg 65  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  10763707 atgcaggggatacgatacgtcaaccattttaaagtatcgg 10763668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 10822457 - 10822402
Alignment:
Q  17 gtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||||||||| |||||| ||| ||||||||| |||||||||||||||| |||||||    
T  10822457 gtgcaggatacgcagggaatatgatacgtcatccattttgaagtatcgaggcttca 10822402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 29168007 - 29167944
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||| ||||||||| |||||||||||||| | ||||| ||||    
T  29168007 tatcggtgcaggatacgcaggggatatgatacgtcatccattttgaagtatggaggctttacag 29167944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 36367750 - 36367813
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||  ||||||| ||||||||||||||| || ||||||||    
T  36367750 tatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcaggacttcacag 36367813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 30323778 - 30323712
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||||||||||||||  ||| | ||||| | ||||| |||||||||||||||||||||| ||||    
T  30323778 agatatcagtgcaggatacacagagaatacgttgcgtcatccattttgaagtatcggggctttacag 30323712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 24849408 - 24849362
Alignment:
Q  28 gcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||||||||||| ||||||| | ||||||||||||||| ||||||||    
T  24849408 gcaggggatacggtacgtcatctattttgaagtatcggagcttcaca 24849362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 31653457 - 31653523
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||| ||||| ||||  || |||||||||||| | | ||||||||||||||| |||||||||||    
T  31653457 agatatcggtgcatgatacacaagggatacgatacattatccattttgaagtatcagggcttcacag 31653523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 2364731 - 2364674
Alignment:
Q  18 tgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||||| |||||||||| | ||||| | ||||||||||||||| ||| |||||||    
T  2364731 tgcaggatacgcaggggatatggtacgttatccattttgaagtatctgggtttcacag 2364674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 32381122 - 32381175
Alignment:
Q  17 gtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggctt 70  Q
    ||||| ||||||||||||||||| ||  ||| ||||||| ||||||||||||||    
T  32381122 gtgcatgatatgcaggggatacggtatatcatccattttaaagtatcggggctt 32381175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 40776050 - 40775997
Alignment:
Q  17 gtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggctt 70  Q
    |||||||||| |||||||||||  ||||||  ||||||||||||||| ||||||    
T  40776050 gtgcaggatacgcaggggatacattacgtcttccattttgaagtatctgggctt 40775997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 14334209 - 14334166
Alignment:
Q  34 gatacgatacgtcaaccattttgaagtatcggggcttcacagctg 78  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||    
T  14334209 gatacggtacgtcatccattttgaagtatc-gggcttcacagctg 14334166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 24590173 - 24590233
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    ||||||||||||||| ||| || ||||| |||| || || |||||||||||||| ||||||    
T  24590173 tatcagtgcaggatacgcaaggaatacggtacgccatcccttttgaagtatcggcgcttca 24590233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 1795452 - 1795390
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  1795452 tatcggtgcaggatacggaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 1795390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 12852188 - 12852116
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||||| |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  12852188 atcaggaag-tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 12852116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 30777580 - 30777645
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| |||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  30777580 tatcggtgcaggatacgcaagggatacgatacgtcatccattttgaagtatcggggcttcacagct 30777645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 10656880 - 10656817
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||    
T  10656880 tatcggtgcaggatacgcaggggatacgatacgtcatccattttaaagtatcggggcttcacag 10656817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 32707889 - 32707952
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  32707889 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 32707952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 39690821 - 39690884
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  39690821 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 39690884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 30918438 - 30918376
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    |||| |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  30918438 tatcggtgcaggatacgcaggggatacaatacgtcatccattttgaagtatcggggcttcaca 30918376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 22774617 - 22774552
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||| |||||||| | |||||||    
T  22774617 agatatcggtgcaggatatgcaggggatacgatacgccaaccattttaaagtatcgagacttcaca 22774552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 26716343 - 26716270
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||||| || |||| ||| |||||| |||||||||||||||||||| |||||||||||||||| ||||||||||    
T  26716343 atcaggcaggtatcggtgtaggatacgcaggggatacgatacgtcatccattttgaagtatcgaggcttcacag 26716270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 26795051 - 26795116
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| |||||||||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||    
T  26795051 tatcggtgcaggatacgcaggggatacgatacgtcatccattttaaagtatcagggcttcacagct 26795116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 26986083 - 26986010
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||||| || |||| ||| |||||| |||||||||||||||||||| |||||||||||||||| ||||||||||    
T  26986083 atcaggcaggtatcggtgtaggatacgcaggggatacgatacgtcatccattttgaagtatcgaggcttcacag 26986010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 33829813 - 33829753
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||    
T  33829813 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 33829753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 1639840 - 1639903
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||  ||||||| |||||||||||||||||||||||||||    
T  1639840 tatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttcacag 1639903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 30284655 - 30284725
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||||| || |||| |||||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||    
T  30284655 atcaggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggagcttca 30284725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 6243216 - 6243279
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||| |||||| |||||||| ||||||||||||||||| |||||||||    
T  6243216 tatcggtgcaggatacgcagaggatacaatacgtcatccattttgaagtatcggagcttcacag 6243279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 9792373 - 9792315
Alignment:
Q  18 tgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagc 76  Q
    |||||||||  ||||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  9792373 tgcaggatacacaggggatacggtacgtcatccattttaaagtatcggggcttcacagc 9792315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 26691676 - 26691618
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggctt 70  Q
    |||| |||||| ||| |||||||||||||||||||| | ||||||||||||||||||||    
T  26691676 tatcggtgcagaatacgcaggggatacgatacgtcatctattttgaagtatcggggctt 26691618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 26961408 - 26961350
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggctt 70  Q
    |||| |||||| ||| |||||||||||||||||||| | ||||||||||||||||||||    
T  26961408 tatcggtgcagaatacgcaggggatacgatacgtcatctattttgaagtatcggggctt 26961350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 11906281 - 11906220
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggctt 70  Q
    ||||||| |||||||||| |||||| |||| |||||||| |||||||||||||||| |||||    
T  11906281 agatatcggtgcaggatacgcagggaatacaatacgtcatccattttgaagtatcgaggctt 11906220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 14836435 - 14836390
Alignment:
Q  18 tgcaggatatgcaggggatacgatacgtcaaccattttgaagtatc 63  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  14836435 tgcaggatacgcaggggatacaatacgtcaaccattttgaagtatc 14836390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 7629130 - 7629070
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    ||||||| || |||| |||||||||||||||||||| ||||||||| ||||| ||||||||    
T  7629130 tatcagtacaagatacgcaggggatacgatacgtcatccattttgaggtatcagggcttca 7629070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 41392770 - 41392830
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| |||||||||||| ||||||| ||||||||||||||| || |||||    
T  41392770 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatctggacttca 41392830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 5722047 - 5721985
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||||||||||| |||||||||||||||||||| | ||||| || |||| |||||||||||    
T  5722047 tatcagtgcaggatacgcaggggatacgatacgtcatcaattttaaaatatc-gggcttcacag 5721985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 17138312 - 17138370
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttc 71  Q
    |||| |||||||||| ||||||||||| |||||||| | |||||||||||||||||||||    
T  17138312 tatcggtgcaggatacgcaggggatac-atacgtcatctattttgaagtatcggggcttc 17138370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 32624920 - 32624875
Alignment:
Q  29 caggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||||||||| ||||||| |||||||||| |||||||||||||||    
T  32624920 caggggatacggtacgtcatccattttgaaatatcggggcttcaca 32624875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 5612523 - 5612562
Alignment:
Q  35 atacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  5612523 atacgatacgtcatccattttgaagtatctgggcttcaca 5612562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 32728773 - 32728830
Alignment:
Q  18 tgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||| ||||||||||| |||| ||| | ||||||||||||||| |||||||||    
T  32728773 tgcaagatacgcaggggatacaatacatcatcaattttgaagtatcggagcttcacag 32728830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 44648 - 44713
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  44648 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagct 44713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 14795083 - 14795018
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  14795083 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagct 14795018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 3403627 - 3403694
Alignment:
Q  6 ggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcac 73  Q
    |||||||||||||||||||||  ||||||||||| ||||||| |||||||||||||| ||||||||||    
T  3403627 ggaagatatcagtgcaggatacacaggggatacggtacgtcatccattttgaagtattggggcttcac 3403694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 53322397 - 53322335
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||    
T  53322397 tatcagtgcaggatacgcaaaggatacgatacgtcatccattttgaagtatcggggcttcaca 53322335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 5834890 - 5834825
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| |||||||||| |||||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  5834890 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggagcttcacagct 5834825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 47607179 - 47607107
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||||| ||||||| |||||||||| ||||| ||||||||| |||| |||||||||||||||||||||||||||    
T  47607179 atcaggcagatatc-gtgcaggatacgcaggagatacgatatgtcatccattttgaagtatcggggcttcacag 47607107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 8064167 - 8064227
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||    
T  8064167 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 8064227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 1177036 - 1176981
Alignment:
Q  17 gtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||||||||| | |||||||||||||||||||| ||||||||||||||||||||||    
T  1177036 gtgcaggatacgtaggggatacgatacgtcaactattttgaagtatcggggcttca 1176981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 19738757 - 19738698
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttc 71  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  19738757 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttc 19738698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 28377056 - 28376993
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| ||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||    
T  28377056 tatcggtgcaggatacacaggagatacgatacgtcatccattttgaagtatcggggcttcacag 28376993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 52122927 - 52122990
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||||||||  ||||||| |||||||||||||||||||||||||||    
T  52122927 tatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttcacag 52122990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 51674918 - 51674856
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 74  Q
    ||||||||||| ||||||||| |||||||||||||| | ||||||||||||||| ||||||||    
T  51674918 tatcagtgcagaatatgcaggagatacgatacgtcatctattttgaagtatcggcgcttcaca 51674856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 36511999 - 36512052
Alignment:
Q  19 gcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||    
T  36511999 gcaggatacgcacgggatacaatacgtcaaccattttgaagtatcggggcttca 36512052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 41145666 - 41145609
Alignment:
Q  18 tgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    ||||||||| |||||||||||  ||||||| |||||||||||||||||||||||||||    
T  41145666 tgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttcacag 41145609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 5325779 - 5325839
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| ||||||||||| |||||||| ||||||| ||||||||||||||||    
T  5325779 tatcggtgcaggatacgcaggggatacaatacgtcatccattttaaagtatcggggcttca 5325839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 38492317 - 38492377
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| |||||||||||  ||||||| ||||||||||||||||||||||||    
T  38492317 tatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttca 38492377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 52721334 - 52721274
Alignment:
Q  2 atcaggaagatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtat 62  Q
    |||||| ||||||| |||||||||| |||||||||||||||||||| | ||||||||||||    
T  52721334 atcaggcagatatcggtgcaggatacgcaggggatacgatacgtcatctattttgaagtat 52721274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 46431997 - 46432053
Alignment:
Q  18 tgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||||||||||||| ||||||||||||||| || |||||||||||| |||||||||||    
T  46431997 tgcaggatatgcagaggatacgatacgtcatccgttttgaagtatc-gggcttcacag 46432053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 40694130 - 40694070
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||| ||| ||| |||||||||||| ||| ||||||||||||||||||||||||    
T  40694130 tatcggtgcagaatacgcatgggatacgatacatcatccattttgaagtatcggggcttca 40694070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 10257744 - 10257697
Alignment:
Q  28 gcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||||||    
T  10257744 gcagcggatacgatacatcatccattttgaagtatcggggcttcacag 10257697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 42472627 - 42472690
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| |||||||||| |||||| ||||  ||||||| |||||||||||||||||| ||||||||    
T  42472627 tatcggtgcaggatacgcagggaatacagtacgtcatccattttgaagtatcgggacttcacag 42472690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 31946263 - 31946324
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcac 73  Q
    |||| |||||||||| |||||| ||||||||||||| ||||||| ||||||||  |||||||    
T  31946263 tatcggtgcaggatacgcagggaatacgatacgtcatccattttaaagtatcgaagcttcac 31946324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 51858883 - 51858834
Alignment:
Q  21 aggatatgcaggggatacgatacgtcaaccattttgaagtatcggggctt 70  Q
    |||||| ||||| |||||||||||||| ||||||| ||||||||||||||    
T  51858883 aggatacgcaggagatacgatacgtcatccattttaaagtatcggggctt 51858834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 55901197 - 55901262
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| ||||||||||  ||||||||||||||||||| | ||||| ||||||||||| |||| ||||    
T  55901197 tatcggtgcaggatacacaggggatacgatacgtcatctattttaaagtatcggggtttcatagct 55901262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 2586379 - 2586336
Alignment:
Q  29 caggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||    
T  2586379 caggggatacggtacgtcatccattttaaagtatcggggcttca 2586336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 27981959 - 27981905
Alignment:
Q  9 agatatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatc 63  Q
    ||||||| ||| |||||  ||||| |||||||||||||| |||||||||||||||    
T  27981959 agatatcggtggaggatgcgcaggagatacgatacgtcatccattttgaagtatc 27981905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 44121900 - 44121960
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| ||||  |||||||||||||  ||||||||||||||  ||||||||    
T  44121900 tatcggtgcaggatacgcagaagatacgatacgtcgtccattttgaagtatgtgggcttca 44121960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 8150 - 8214
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagc 76  Q
    |||| |||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  8150 tatcggtgcaggatacgcaggggatacggtacatcatccattttgaagtatcggggcttcacagc 8214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 5572 - 5507
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| |||||||||| |||||||||||| ||||||  |||||||||||||||||||||| ||||||    
T  5572 tatcggtgcaggatacgcaggggatacggtacgtcgtccattttgaagtatcggggctttacagct 5507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 25588 - 25653
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacagct 77  Q
    |||| |||||| ||| |||||||||||| | ||||| |||||||||||||||||||||||||||||    
T  25588 tatcggtgcagaatacgcaggggatacggtgcgtcatccattttgaagtatcggggcttcacagct 25653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 42123 - 42183
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 72  Q
    |||| |||||||||| |||||||||||  ||||||| ||||||||||||||||||||||||    
T  42123 tatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttca 42183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 13310 - 13252
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggctt 70  Q
    |||| |||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||    
T  13310 tatcggtgcaggatacgcaggagatacgatacgtcatccattttgaagtatcggagctt 13252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 13923 - 13863
Alignment:
Q  15 cagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||||||||||| ||||  |||||  ||||||| |||||||||||||||||| ||||||||    
T  13923 cagtgcaggatacgcagatgatacagtacgtcatccattttgaagtatcgggacttcacag 13863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 30502 - 30565
Alignment:
Q  12 tatcagtgcaggatatgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 75  Q
    |||| ||| |||||| |||||  ||||| ||||| | |||||||||||||||||||||||||||    
T  30502 tatcggtgtaggatacgcaggaaatacggtacgttatccattttgaagtatcggggcttcacag 30565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University