View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_high_17 (Length: 458)
Name: NF2700_high_17
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 153 - 440
Target Start/End: Original strand, 35360003 - 35360291
Alignment:
| Q |
153 |
actttaagcccgtgacttgggaggttgtaccagacaaattcaagcaaaatgtgtttgatacaatgtcggtaaattacactctcttttagaagtcacattt |
252 |
Q |
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| T |
35360003 |
actttaagcccgtgacttgggaggttgtaccagacaaattcaagcaaaatgtgtttgatacaaggtcggtaaattacactctcttttagaagtcacattt |
35360102 |
T |
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| Q |
253 |
cagcctttagatgtaactaatcatggccatgtttggcaatttcattcaatttata-nnnnnnnaggattttccctatcaaccaagtaggacaattggata |
351 |
Q |
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| T |
35360103 |
cagcctttagatgtaactaatcatggccatgtttggcaatttcattcaatttatattttttttaggattttccctatcaaccaagtaggacaattggata |
35360202 |
T |
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| Q |
352 |
tttgtagcacatttcgtctcttctctgtctctagcctaaacacagcaaataattgtatatttggagaaatgttattttcacacgccttc |
440 |
Q |
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| T |
35360203 |
tttgtagcacatttcgtctcttctctgtctctagcctaaacacagcaaataattgtatatttgaagaaatgttattttcacacgccttc |
35360291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 164 - 448
Target Start/End: Original strand, 35355721 - 35356009
Alignment:
| Q |
164 |
gtgacttgggaggttgtaccagacaaattcaagcaaaa-tgtgtttgatacaatgtcggtaaattacactctcttttagaagtcacatttcagcctttag |
262 |
Q |
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| T |
35355721 |
gtgacttgtgagattataccagacaaattcaagcaaaaatatgttcgatataatgttggtagattgcactcacttttagaagtcacatttcagcttttaa |
35355820 |
T |
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| Q |
263 |
atgtaactaatcatggccatgtttggcaatttcattcaatttata-nnnnnnnaggattttccctatcaaccaagtaggacaattggatatttgtagcac |
361 |
Q |
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| T |
35355821 |
atgtaactaatcatgactatgtttagcaatttcattcgatttatatttcttctaggattttccctatcaaccaagtaggacaattggatatttgtagcac |
35355920 |
T |
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| Q |
362 |
atttcgtctctt-ctctgtctctagcctaaacaca-gcaaataattgtatatttggagaaatgttattttcacacgccttcatctcact |
448 |
Q |
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| T |
35355921 |
atttcgtcttttgttctgtctctagcctaaacaaaggttaggaataatatttttggagaaatgttgttttcacacgccttcatttcact |
35356009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 35359870 - 35359930
Alignment:
| Q |
20 |
agaagcacattcaaagtctcaaaccaacaccatcgatggtcaaattataatagtcagttac |
80 |
Q |
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| T |
35359870 |
agaagcacattcaaagtctcaaaccaacaccatcgaaggtcaaattataatagttagttac |
35359930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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