View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700_high_18 (Length: 454)

Name: NF2700_high_18
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700_high_18
NF2700_high_18
[»] chr8 (23 HSPs)
chr8 (1-315)||(30984190-30984504)
chr8 (1-283)||(30210397-30210679)
chr8 (1-236)||(34774315-34774550)
chr8 (139-315)||(189774-189950)
chr8 (139-315)||(717378-717554)
chr8 (139-315)||(878485-878661)
chr8 (311-442)||(30210955-30211086)
chr8 (311-442)||(30982804-30982935)
chr8 (311-442)||(34774023-34774154)
chr8 (311-442)||(193758-193888)
chr8 (311-442)||(721362-721492)
chr8 (311-442)||(882469-882599)
chr8 (42-152)||(629476-629586)
chr8 (311-442)||(44240493-44240622)
chr8 (76-174)||(35164381-35164474)
chr8 (76-174)||(35802344-35802442)
chr8 (74-144)||(924099-924169)
chr8 (76-174)||(45276403-45276501)
chr8 (1-41)||(308875-308915)
chr8 (76-174)||(8416662-8416760)
chr8 (76-148)||(36821653-36821725)
chr8 (109-171)||(3590107-3590169)
chr8 (348-390)||(31778710-31778752)
[»] chr5 (25 HSPs)
chr5 (1-315)||(29542330-29542644)
chr5 (1-298)||(42663359-42663656)
chr5 (1-293)||(3260749-3261041)
chr5 (1-214)||(33114959-33115172)
chr5 (1-214)||(14082816-14083029)
chr5 (311-442)||(3260531-3260662)
chr5 (311-442)||(29542015-29542146)
chr5 (311-442)||(42663748-42663879)
chr5 (311-442)||(27738146-27738275)
chr5 (311-442)||(33232828-33232957)
chr5 (311-432)||(7071625-7071744)
chr5 (74-171)||(2526282-2526379)
chr5 (76-148)||(53693-53765)
chr5 (76-174)||(27739351-27739449)
chr5 (78-175)||(8958502-8958599)
chr5 (76-173)||(37066560-37066657)
chr5 (76-173)||(41040137-41040234)
chr5 (76-174)||(7073275-7073373)
chr5 (76-174)||(21022632-21022730)
chr5 (76-174)||(33229204-33229302)
chr5 (76-174)||(39236896-39236994)
chr5 (109-148)||(40979452-40979491)
chr5 (109-171)||(10900165-10900227)
chr5 (76-174)||(19356501-19356599)
chr5 (109-171)||(19375409-19375471)
[»] chr3 (26 HSPs)
chr3 (1-315)||(51128903-51129217)
chr3 (1-315)||(47141290-47141604)
chr3 (1-315)||(52691930-52692244)
chr3 (1-293)||(1527534-1527826)
chr3 (1-251)||(38469071-38469321)
chr3 (1-219)||(47697002-47697220)
chr3 (311-442)||(1527879-1528010)
chr3 (311-442)||(38469554-38469685)
chr3 (311-442)||(47140944-47141075)
chr3 (311-442)||(51124964-51125095)
chr3 (311-442)||(52692913-52693044)
chr3 (76-174)||(33025798-33025896)
chr3 (76-174)||(42074392-42074490)
chr3 (76-175)||(53687376-53687475)
chr3 (76-174)||(51229727-51229825)
chr3 (76-145)||(51407464-51407533)
chr3 (78-174)||(48181071-48181167)
chr3 (94-172)||(11263709-11263787)
chr3 (76-174)||(42274518-42274616)
chr3 (76-174)||(45150598-45150696)
chr3 (76-172)||(48254506-48254602)
chr3 (76-174)||(28182370-28182468)
chr3 (109-171)||(30809842-30809904)
chr3 (76-174)||(31813401-31813499)
chr3 (109-171)||(44610827-44610889)
chr3 (109-171)||(44328692-44328754)
[»] chr2 (25 HSPs)
chr2 (1-315)||(40254347-40254661)
chr2 (5-297)||(14379667-14379959)
chr2 (7-221)||(31686770-31686984)
chr2 (1-214)||(44282497-44282710)
chr2 (1-213)||(31786702-31786914)
chr2 (311-442)||(14380478-14380609)
chr2 (311-442)||(31686514-31686645)
chr2 (311-442)||(31787021-31787152)
chr2 (311-442)||(40254881-40255012)
chr2 (311-442)||(2443126-2443257)
chr2 (2-206)||(2443663-2443868)
chr2 (311-413)||(13896370-13896470)
chr2 (311-413)||(14036987-14037087)
chr2 (76-174)||(37640761-37640859)
chr2 (76-174)||(37996718-37996816)
chr2 (79-174)||(3739048-3739143)
chr2 (76-174)||(7473518-7473616)
chr2 (76-174)||(17480814-17480912)
chr2 (110-171)||(37551592-37551653)
chr2 (76-174)||(14033372-14033470)
chr2 (76-174)||(43342277-43342375)
chr2 (76-174)||(13892752-13892850)
chr2 (76-174)||(14032877-14032975)
chr2 (76-174)||(35458185-35458283)
chr2 (113-171)||(44002684-44002742)
[»] chr1 (31 HSPs)
chr1 (1-315)||(38843154-38843468)
chr1 (1-315)||(50979124-50979438)
chr1 (1-315)||(51488384-51488698)
chr1 (1-315)||(27000155-27000469)
chr1 (1-298)||(7593122-7593406)
chr1 (1-235)||(5271472-5271706)
chr1 (1-215)||(26821385-26821599)
chr1 (1-214)||(36496041-36496254)
chr1 (1-214)||(38627541-38627754)
chr1 (1-201)||(15353231-15353431)
chr1 (311-442)||(5271200-5271331)
chr1 (311-442)||(26999985-27000116)
chr1 (311-442)||(38843688-38843819)
chr1 (311-442)||(50978520-50978651)
chr1 (311-442)||(51488069-51488200)
chr1 (314-442)||(15353534-15353662)
chr1 (311-442)||(7592899-7593030)
chr1 (311-442)||(27576217-27576348)
chr1 (2-184)||(27575898-27576081)
chr1 (311-442)||(46407859-46407988)
chr1 (311-416)||(35606701-35606804)
chr1 (75-174)||(47655888-47655987)
chr1 (388-442)||(26821785-26821839)
chr1 (74-144)||(11051192-11051262)
chr1 (109-171)||(1762251-1762313)
chr1 (76-174)||(6706132-6706230)
chr1 (76-174)||(13509940-13510038)
chr1 (74-171)||(11829075-11829172)
chr1 (76-174)||(46406421-46406519)
chr1 (76-174)||(35604814-35604912)
chr1 (74-139)||(46033716-46033781)
[»] chr4 (29 HSPs)
chr4 (1-315)||(24037950-24038264)
chr4 (1-315)||(39382846-39383160)
chr4 (1-315)||(49127590-49127904)
chr4 (1-315)||(18140377-18140690)
chr4 (1-262)||(31430977-31431238)
chr4 (1-235)||(24246543-24246777)
chr4 (311-442)||(24035795-24035926)
chr4 (311-442)||(24246918-24247049)
chr4 (311-442)||(39382613-39382744)
chr4 (311-442)||(49128029-49128160)
chr4 (311-442)||(51833963-51834094)
chr4 (311-442)||(56560879-56561008)
chr4 (11-197)||(51834225-51834412)
chr4 (311-411)||(52056607-52056705)
chr4 (76-174)||(53404111-53404209)
chr4 (76-174)||(45105807-45105904)
chr4 (76-174)||(52058252-52058350)
chr4 (81-174)||(30418397-30418490)
chr4 (76-172)||(22606362-22606458)
chr4 (74-144)||(28911579-28911649)
chr4 (76-174)||(38767791-38767889)
chr4 (77-174)||(53663635-53663732)
chr4 (76-172)||(28963870-28963966)
chr4 (109-171)||(16203097-16203159)
chr4 (109-171)||(39732843-39732905)
chr4 (109-171)||(50523874-50523936)
chr4 (76-148)||(49723784-49723855)
chr4 (109-171)||(5937846-5937908)
chr4 (83-148)||(26457118-26457183)
[»] chr7 (19 HSPs)
chr7 (1-293)||(25341355-25341647)
chr7 (1-231)||(31012375-31012605)
chr7 (311-442)||(25341171-25341302)
chr7 (311-442)||(31012190-31012321)
chr7 (311-442)||(41064854-41064985)
chr7 (53-184)||(41064585-41064717)
chr7 (319-442)||(12910305-12910426)
chr7 (76-174)||(25970433-25970531)
chr7 (74-171)||(39857075-39857172)
chr7 (75-174)||(37371078-37371177)
chr7 (76-174)||(14999868-14999966)
chr7 (76-174)||(30825190-30825288)
chr7 (78-174)||(26826384-26826480)
chr7 (76-174)||(25472765-25472863)
chr7 (76-174)||(12909229-12909327)
chr7 (76-174)||(43664814-43664912)
chr7 (384-432)||(47238757-47238805)
chr7 (342-393)||(40725766-40725817)
chr7 (109-171)||(19544572-19544634)
[»] chr6 (11 HSPs)
chr6 (1-297)||(30018776-30019072)
chr6 (311-442)||(30019591-30019722)
chr6 (311-442)||(31745911-31746043)
chr6 (311-442)||(21515286-21515415)
chr6 (2-184)||(31746179-31746359)
chr6 (74-171)||(4146810-4146907)
chr6 (76-174)||(21517357-21517455)
chr6 (109-148)||(30134180-30134219)
chr6 (76-174)||(365591-365689)
chr6 (109-171)||(20838498-20838560)
chr6 (109-171)||(27825057-27825119)
[»] scaffold0069 (1 HSPs)
scaffold0069 (76-144)||(16815-16883)
[»] scaffold0006 (1 HSPs)
scaffold0006 (77-174)||(91535-91634)
[»] scaffold0808 (1 HSPs)
scaffold0808 (76-174)||(4090-4188)
[»] scaffold0068 (1 HSPs)
scaffold0068 (76-172)||(37697-37791)


Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 30984504 - 30984190
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30984504 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 30984405  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30984404 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 30984305  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30984304 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 30984205  T
Q  301 gtcttaactctcaat 315  Q
    |||||||||||||||    
T  30984204 gtcttaactctcaat 30984190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 30210397 - 30210679
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30210397 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 30210496  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30210497 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 30210596  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaat 283  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30210597 gtcctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaat 30210679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34774550 - 34774315
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34774550 ctctgtttggtttggcttttgcaaagccagaatcaattttggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaatag 34774451  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34774450 tttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 34774351  T
Q  201 gccctcattaatttttctaacccttctccaaccgaa 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  34774350 gccctcattaatttttctaacccttctccaaccgaa 34774315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 139 - 315
Target Start/End: Original strand, 189774 - 189950
Alignment:
Q  139 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctccaaccgaatt 238  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  189774 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctccaaccgaatt 189873  T
Q  239 ttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  189874 ttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 189950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 139 - 315
Target Start/End: Original strand, 717378 - 717554
Alignment:
Q  139 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctccaaccgaatt 238  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  717378 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctccaaccgaatt 717477  T
Q  239 ttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  717478 ttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 717554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 139 - 315
Target Start/End: Original strand, 878485 - 878661
Alignment:
Q  139 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctccaaccgaatt 238  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  878485 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctccaaccgaatt 878584  T
Q  239 ttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  878585 ttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 878661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 30210955 - 30211086
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30210955 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 30211054  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  30211055 ttcatgatgttagtattgtaataccttatatt 30211086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 30982935 - 30982804
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30982935 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 30982836  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  30982835 ttcatgatgttagtattgtaataccttatatt 30982804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 34774154 - 34774023
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34774154 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 34774055  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  34774054 ttcatgatgttagtattgtaataccttatatt 34774023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 193758 - 193888
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  193758 tcaatattttagtactataatacacattatgttagttttgtgataatattttaatactctattgcactttaaattctattatctatttgtaa-ttttatt 193856  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  193857 ttcatgatgttagtattgtaataccttatatt 193888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 721362 - 721492
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  721362 tcaatattttagtactataatacacattatgttagttttgtgataatattttaatactctattgcactttaaattctattatctatttgtaa-ttttatt 721460  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  721461 ttcatgatgttagtattgtaataccttatatt 721492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 882469 - 882599
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  882469 tcaatattttagtactataatacacattatgttagttttgtgataatattttaatactctattgcactttaaattctattatctatttgtaa-ttttatt 882567  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  882568 ttcatgatgttagtattgtaataccttatatt 882599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 629586 - 629476
Alignment:
Q  42 gagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattc 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  629586 gagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattc 629487  T
Q  142 ctagcttctta 152  Q
    |||||||||||    
T  629486 ctagcttctta 629476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 44240493 - 44240622
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  44240493 tcaatattttagtactataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 44240590  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    |||||| | |||||||| ||||  ||||||||    
T  44240591 ttcatgctattagtattgtaataacttatatt 44240622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 35164474 - 35164381
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  35164474 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 35164381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 35802442 - 35802344
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||| ||||| ||||| |||| |||||||||||||||||| |  |||||||||||  ||||||||| |  ||||||||||||||||||||||    
T  35802442 tgtttggtttgacttttaaaaattgcttctatcctccaaaagcaattatccttgaagctacatatcctagcttttggctttcctagaatcaattctaca 35802344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 924099 - 924169
Alignment:
Q  74 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 144  Q
    ||||||||||||| ||||||||||| |||| ||| ||||||||| |||||||||| |||||||||||||||    
T  924099 catgtttggtttgacttttcaaaattgcttctatactccaaaagtaattctagttaaagctacaattccta 924169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 45276501 - 45276403
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||| ||||| ||||| ||||| | || |||||||||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  45276501 tgttttgtttgacttttaaaaattgattatatcctccaaaagcaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 45276403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 308875 - 308915
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctg 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  308875 ctctgtttggtttggcttttgcaaagccagaatcaattctg 308915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 8416662 - 8416760
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    |||||| |||||||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||| |||||  |||| |||||||||||||||||    
T  8416662 tgtttgatttggcttttaagaattgattctatcctccaaaagcaattatccttaaagctacaaatcctaacttctagcttttctagaatcaattctaca 8416760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 36821725 - 36821653
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 148  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||||| |  || ||| ||||||||| |||||    
T  36821725 tgtttggtttggcttttcagaattgcttctatcctccaaaagcaattatccttaaagttacaattccaagctt 36821653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 3590107 - 3590169
Alignment:
Q  109 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    |||||||| ||||||| ||||||||||||||||||| ||| | | ||  ||||||||||||||    
T  3590107 ctccaaaaacaattctggttgaagctacaattcctaacttttgagttaactagaatcaattct 3590169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 390
Target Start/End: Original strand, 31778710 - 31778752
Alignment:
Q  348 ttgtaataatattttaatactctattgcactttaaattctatt 390  Q
    |||||||||||||||| |||| ||||| |||||||||||||||    
T  31778710 ttgtaataatattttagtactatattgaactttaaattctatt 31778752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 29542644 - 29542330
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29542644 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 29542545  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29542544 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 29542445  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29542444 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 29542345  T
Q  301 gtcttaactctcaat 315  Q
    |||||||||||||||    
T  29542344 gtcttaactctcaat 29542330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 42663359 - 42663656
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42663359 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaaaatag 42663458  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42663459 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 42663558  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctg 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42663559 gccctcattaatttttctaacccttctccaaccgaattttttctttctacagtcttattaaaataaatgttggtgaagagaataacatttattttctg 42663656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 3261041 - 3260749
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3261041 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaaaatag 3260942  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3260941 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 3260842  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttatt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3260841 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttatt 3260749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 33114959 - 33115172
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33114959 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaatag 33115058  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33115059 tttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 33115158  T
Q  201 gccctcattaattt 214  Q
    ||||||||||||||    
T  33115159 gccctcattaattt 33115172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 14082816 - 14083029
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  14082816 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctacaatatttaacatgtttggtttgactttttaaaatag 14082915  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14082916 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 14083015  T
Q  201 gccctcattaattt 214  Q
    ||||||||||||||    
T  14083016 gccctcattaattt 14083029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 3260662 - 3260531
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3260662 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 3260563  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  3260562 ttcatgatgttagtattgtaataccttatatt 3260531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 29542146 - 29542015
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29542146 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 29542047  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  29542046 ttcatgatgttagtattgtaataccttatatt 29542015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 42663748 - 42663879
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42663748 tcaatattttagtactataatacacattatgttagttttgtaataatattttaataatctattgcactttaaattctattatctatttgtaatttttatt 42663847  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  42663848 ttcatgatgttagtattgtaataccttatatt 42663879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 27738275 - 27738146
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  27738275 tcaatattttagtactataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 27738178  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    |||||| | |||||||| ||||  ||||||||    
T  27738177 ttcatgctattagtattgtaataacttatatt 27738146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 33232828 - 33232957
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  33232828 tcaatattttagtactataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 33232925  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    |||||| | |||||||| ||||  ||||||||    
T  33232926 ttcatgctattagtattgtaataacttatatt 33232957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 432
Target Start/End: Complemental strand, 7071744 - 7071625
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||| ||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  7071744 tcaatattttagtaccataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 7071647  T
Q  411 ttcatgatgttagtattataat 432  Q
    |||||| | |||||||| ||||    
T  7071646 ttcatggtattagtattgtaat 7071625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 2526282 - 2526379
Alignment:
Q  74 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    ||||||||||||||||||||| ||| |||| || || |||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  2526282 catgtttggtttggcttttcagaattgcttctaccccccaaaagcaattctggatgaagctacaattcctagcttttgagttaactagaatcaattct 2526379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 53765 - 53693
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 148  Q
    ||||||||||| ||||||| ||| |||| |||||||||||||||||| | |||||||||||||||||||||||    
T  53765 tgtttggtttgccttttcataattgcttctatcctccaaaagcaattatggttgaagctacaattcctagctt 53693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 27739449 - 27739351
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  27739449 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccgtgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 27739351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 8958599 - 8958502
Alignment:
Q  78 tttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacac 175  Q
    ||||||||| ||||||| ||| | || ||||||| |||| |||||||  || |||||||||||||||  || |  |||||||||||||||||||||||    
T  8958599 tttggtttgacttttcagaattgtttctatcctctaaaaacaattctccttaaagctacaattcctaatttttggctttcctagaatcaattctacac 8958502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 37066657 - 37066560
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctac 173  Q
    ||||||||||||||||| | ||| | || ||||||| |||||||||| |  || ||||||||| ||||| |||||  |||| ||||||||||||||||    
T  37066657 tgtttggtttggcttttaagaattggttatatcctctaaaagcaattatcattaaagctacaaatcctaacttctagcttttctagaatcaattctac 37066560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 41040234 - 41040137
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctac 173  Q
    ||||||||||||||||| | ||| |||| ||||||||||||  |||| |  |||||||||||| ||||||||| |  |||| | ||||||||||||||    
T  41040234 tgtttggtttggcttttaagaattgcttctatcctccaaaaataattatccttgaagctacaaatcctagcttttggcttttcaagaatcaattctac 41040137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 7073373 - 7073275
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||||| ||||| |||| |||   ||||||| |||| |  |||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  7073373 tgtttggtttggcttttaaaaattgcttctatttcccaaaagtaattatccttgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 7073275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 21022730 - 21022632
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||||| | ||| | || |||||||| ||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  21022730 tgtttggtttggcttttaagaattgattctatcctcctaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 21022632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 33229204 - 33229302
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  33229204 tgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 33229302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 39236994 - 39236896
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||||| | ||| | || |||||||||||| ||||| |   ||||||||||| ||||| ||| | |||||  ||||||||||||||||    
T  39236994 tgtttggtttggcttttaagaattgattctatcctccaaaaacaattatccatgaagctacaaatcctaacttttgacttttgtagaatcaattctaca 39236896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 40979452 - 40979491
Alignment:
Q  109 ctccaaaagcaattctagttgaagctacaattcctagctt 148  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  40979452 ctccaaaagcaattctggatgaagctacaattcctagctt 40979491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 10900165 - 10900227
Alignment:
Q  109 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    |||||||||||||||| | ||||||||||||||||| ||| | | ||  ||||||||||||||    
T  10900165 ctccaaaagcaattctggatgaagctacaattcctaacttttgagttagctagaatcaattct 10900227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 19356501 - 19356599
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||||| | | | | || ||||||| |||||||||| |  || || |||||| |||| |||||| | ||| |||||||||||||||||    
T  19356501 tgtttggtttggcttttaagagttgattctatcctctaaaagcaattatccttaaaactacaaatccttgcttctaatttttctagaatcaattctaca 19356599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 19375471 - 19375409
Alignment:
Q  109 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    |||||||||||||||| | ||||||||||||||||| ||| | | ||  ||||||||||||||    
T  19375471 ctccaaaagcaattctggatgaagctacaattcctaacttttgagttagctagaatcaattct 19375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 51129217 - 51128903
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51129217 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 51129118  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51129117 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 51129018  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51129017 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 51128918  T
Q  301 gtcttaactctcaat 315  Q
    |||||||||||||||    
T  51128917 gtcttaactctcaat 51128903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 47141604 - 47141290
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47141604 ctctgtttggtttggcatttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 47141505  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47141504 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcttagaatcaattctacaccctcaattctattaattccatccct 47141405  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47141404 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 47141305  T
Q  301 gtcttaactctcaat 315  Q
    |||||||||||||||    
T  47141304 gtcttaactctcaat 47141290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 52691930 - 52692244
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  52691930 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttaaaaatag 52692029  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52692030 attttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 52692129  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52692130 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 52692229  T
Q  301 gtcttaactctcaat 315  Q
    |||||||||||||||    
T  52692230 gtcttaactctcaat 52692244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 1527534 - 1527826
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  1527534 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaaactag 1527633  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1527634 cttttatcctccgaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccattcct 1527733  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttatt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1527734 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttatt 1527826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 38469071 - 38469321
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  38469071 ctctgtttggtttggcttttgcaaagccagaatcaattatggagcatttcaaaagcaattctgcaatatttaacatgtttggtttaccttttcaaaatag 38469170  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
     |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38469171 tttttatcctccaaaagcaattctagttgaagctacaattcttagcttcttactttcctataatcaattctacaccctcaattctattaattccatccct 38469270  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgca 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38469271 gccctcattaatttttctaacccttctccaaccgaattttttctttctgca 38469321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 47697002 - 47697220
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47697002 ctctgtttggtttggcttttgcaaagccagaatcaattctgaagcatttcaaaagcaattctgcaatatttaacatgtttggtttgccttttcaaaatag 47697101  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47697102 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 47697201  T
Q  201 gccctcattaatttttcta 219  Q
    |||||||||||||||||||    
T  47697202 gccctcattaatttttcta 47697220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 1527879 - 1528010
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1527879 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 1527978  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  1527979 ttcatgatgttagtattgtaataccttatatt 1528010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 38469554 - 38469685
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38469554 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 38469653  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  38469654 ttcatgatgttagtattgtaataccttatatt 38469685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 47141075 - 47140944
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47141075 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 47140976  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  47140975 ttcatgatgttagtattgtaataccttatatt 47140944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 51125095 - 51124964
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51125095 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 51124996  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  51124995 ttcatgatgttagtattgtaataccttatatt 51124964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 52692913 - 52693044
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52692913 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 52693012  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  52693013 ttcatgatgttagtattgtaataccttatatt 52693044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 33025896 - 33025798
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||||||  || ||||||||||||||||||| |  |||||||| |||||||||||||    
T  33025896 tgtttggtttgacttttcaaaattgcttctatcctccaaaagcaattctccttaaagctacaattcctagcttttggctttcctataatcaattctaca 33025798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 42074392 - 42074490
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||||||| ||| |||| |||||||||||| |||||||  || ||||||||||||||||||| | ||||| || ||||||||||||||    
T  42074392 tgtttggtttggcttttcagaattgcttctatcctccaaaaacaattctccttaaagctacaattcctagcttttgactttgctcgaatcaattctaca 42074490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 53687475 - 53687376
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacac 175  Q
    ||||||||||| ||||||| ||| |||| |||||||||||||||||||| ||| |||||||||||||||| || |  |||| ||| ||||||||||||||    
T  53687475 tgtttggtttgacttttcataattgcttctatcctccaaaagcaattcttgttaaagctacaattcctaggttttggcttttctaaaatcaattctacac 53687376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 51229727 - 51229825
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    |||||||||| |||||||||||| |||| ||||||||||||  ||||||  || ||||||||||||||| ||| |  ||||||||||||||||||||||    
T  51229727 tgtttggtttagcttttcaaaattgcttctatcctccaaaaataattctccttaaagctacaattcctaacttttggctttcctagaatcaattctaca 51229825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 51407464 - 51407533
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctag 145  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||||| | ||||||||||||||| ||||    
T  51407464 tgtttggtttggcttttcagaattgcttctatcctccaaaagcaattttggttgaagctacaatttctag 51407533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 48181071 - 48181167
Alignment:
Q  78 tttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||| | ||| | ||| |||| ||||||||||||||||||||  || || |||||||||||||||| |  ||||||||||||||||||||||    
T  48181071 tttggtttgacattttagaattgcttctatcctccaaaagcaattctccttaaaactacaattcctagcttttggctttcctagaatcaattctaca 48181167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 11263709 - 11263787
Alignment:
Q  94 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 172  Q
    ||||| |||| |||||||||||||||||| |  |||||||||||| ||||||||| |  ||||||||||||||||||||    
T  11263709 aaaattgcttctatcctccaaaagcaattatccttgaagctacaaatcctagcttttggctttcctagaatcaattcta 11263787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 42274518 - 42274616
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    |||||| |||||||||| | ||| | || ||||||||||||||||||||  || ||| ||||||||||||||| |  ||||| ||||||||||||||||    
T  42274518 tgtttgatttggctttttagaattgattctatcctccaaaagcaattctccttaaagttacaattcctagcttttggctttcatagaatcaattctaca 42274616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 45150598 - 45150696
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||||| | ||| | || |||||||||||| ||||| |  |||||||||||| ||||||||| |   |||||||||||||||||||||    
T  45150598 tgtttggtttggcttttaagaattgtttctatcctccaaaaacaattatccttgaagctacaaatcctagcttttggttttcctagaatcaattctaca 45150696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 48254602 - 48254506
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 172  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||    
T  48254602 tgtttggtttgacttttaagaattgattatatcctccaaaagcaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattcta 48254506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 28182370 - 28182468
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||||| | ||| |||| |||||||||| ||||||| |  || |||||| |||||||| ||| |  |||||||| |||||||||||||    
T  28182370 tgtttggtttggctttttagaattgcttctatcctccaacagcaattatccttaaagctaaaattcctaacttttggctttcctataatcaattctaca 28182468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 30809842 - 30809904
Alignment:
Q  109 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    |||||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  30809842 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 30809904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 31813401 - 31813499
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||| ||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  31813401 tgtttagtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 31813499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 44610889 - 44610827
Alignment:
Q  109 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    |||||||||||||||| ||||||||||||||| ||||||| | | |||  |||||||||||||    
T  44610889 ctccaaaagcaattctggttgaagctacaatttctagcttttgagtttattagaatcaattct 44610827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 44328692 - 44328754
Alignment:
Q  109 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    |||||||||||||| | | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  44328692 ctccaaaagcaattttggctgaagctacaattcctagcttttgagttaactagaatcaattct 44328754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 40254347 - 40254661
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254347 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 40254446  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254447 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 40254546  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254547 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 40254646  T
Q  301 gtcttaactctcaat 315  Q
    |||||||||||||||    
T  40254647 gtcttaactctcaat 40254661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 5 - 297
Target Start/End: Original strand, 14379667 - 14379959
Alignment:
Q  5 gtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagcttt 104  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14379667 gtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagcttt 14379766  T
Q  105 tatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14379767 tatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccc 14379866  T
Q  205 tcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttct 297  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14379867 tcattaatttttctaacccttctccaaccgaattttttctttctacagtcttattaaaataaatgttggtgaagagaataacatttattttct 14379959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 31686984 - 31686770
Alignment:
Q  7 ttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagctttta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31686984 ttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagctttta 31686885  T
Q  107 tcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31686884 tcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctc 31686785  T
Q  207 attaatttttctaac 221  Q
    |||||||||||||||    
T  31686784 attaatttttctaac 31686770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 44282497 - 44282710
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44282497 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 44282596  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44282597 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 44282696  T
Q  201 gccctcattaattt 214  Q
    ||||||||||||||    
T  44282697 gccctcattaattt 44282710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 31786702 - 31786914
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786702 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 31786801  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786802 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 31786901  T
Q  201 gccctcattaatt 213  Q
    |||||||||||||    
T  31786902 gccctcattaatt 31786914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 14380478 - 14380609
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14380478 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 14380577  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  14380578 ttcatgatgttagtattgtaataccttatatt 14380609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 31686645 - 31686514
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31686645 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 31686546  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  31686545 ttcatgatgttagtattgtaataccttatatt 31686514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 31787021 - 31787152
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31787021 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 31787120  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  31787121 ttcatgatgttagtattgtaataccttatatt 31787152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 40254881 - 40255012
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254881 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 40254980  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  40254981 ttcatgatgttagtattgtaataccttatatt 40255012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 2443257 - 2443126
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    |||||||||||||| ||| ||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2443257 tcaatattttagtattatgatacacattaaattagttttgtaataatatattaatactctattgcactttaaattctattatctatttgtaatttttatt 2443158  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    |||||| |||||||||| ||||  ||||||||    
T  2443157 ttcatgttgttagtattgtaataacttatatt 2443126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 2443868 - 2443663
Alignment:
Q  2 tctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||||||| | |||  ||| |||||||  | |||| ||||||||||||| ||| |||| || |||||||||||||||||||| ||| |    
T  2443868 tctgtttggtttggcttttgtacagctggaaacaattctacaacattccaaaagcaattctacaacatttcaatatgtttggtttggcttttcagaattg 2443769  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||| |||||||||||| |||||||   | ||||||||||||||||||| |  |||| ||||||||||||||||||||||||||| || ||||||||| ||    
T  2443768 cttctatcctccaaaaacaattctccataaagctacaattcctagcttatgccttttctagaatcaattctacaccctcaattccatcaattccatcact 2443669  T
Q  201 gccctc 206  Q
    ||||||    
T  2443668 gccctc 2443663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 13896370 - 13896470
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||  ||| |||| | ||||| |||||||||||||||||||||||||||||||||    
T  13896370 tcaatattttagtactataatacactttaaattagttttgtaataata--ttagtactttgttgcaatttaaattctattatctatttgtaatttttatt 13896467  T
Q  411 ttc 413  Q
    |||    
T  13896468 ttc 13896470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 14036987 - 14037087
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||  ||| |||| | ||||| |||||||||||||||||||||||||||||||||    
T  14036987 tcaatattttagtactataatacactttaaattagttttgtaataata--ttagtactttgttgcaatttaaattctattatctatttgtaatttttatt 14037084  T
Q  411 ttc 413  Q
    |||    
T  14037085 ttc 14037087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 37640859 - 37640761
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||||  | ||| |||| |||||||||||||||||| |  |||||||||||| || |||||| |  ||||||||||||||||||||||    
T  37640859 tgtttggtttggctttcaagaattgcttctatcctccaaaagcaattatccttgaagctacaaatcttagcttttggctttcctagaatcaattctaca 37640761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 37996718 - 37996816
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||||||| ||| |||| ||||||||||||| |||||   || ||||||||||||||| ||| |  ||||||| ||||||||||||||    
T  37996718 tgtttggtttggcttttcataattgcttctatcctccaaaagtaattcaccttaaagctacaattcctaacttttggctttccttgaatcaattctaca 37996816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 3739143 - 3739048
Alignment:
Q  79 ttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    |||||||||||||||| ||| |||| |||| ||||||||||||| |  || |||||||||||||||  || | |||||| ||||||||||||||||    
T  3739143 ttggtttggcttttcataattgcttctatcatccaaaagcaattttccttaaagctacaattcctaatttttgactttcttagaatcaattctaca 3739048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 7473518 - 7473616
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    |||||||||||| |||| | ||| |||| |||||||||||| ||||| |  |||||||||||| ||||| ||| |  |||||| |||||||||||||||    
T  7473518 tgtttggtttggtttttaagaattgcttctatcctccaaaaacaattatccttgaagctacaaatcctaacttttggctttccaagaatcaattctaca 7473616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 17480814 - 17480912
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||| ||||||||||| | ||| | || |||||| ||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  17480814 tgtttagtttggcttttaagaattgattctatccttcaaaagcaattatctttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 17480912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 37551592 - 37551653
Alignment:
Q  110 tccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    ||||||||||||||| |||||||||||||||||||| |||| | ||  ||||||||||||||    
T  37551592 tccaaaagcaattctggttgaagctacaattcctagtttctgagttaactagaatcaattct 37551653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 14033372 - 14033470
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  14033372 tgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 14033470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 43342375 - 43342277
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    |||||| ||||| |||| | ||| | || |||||||||||||||||| |  || ||||||||| | |||||||||  |||| |||||||||||||||||    
T  43342375 tgtttgatttggtttttaagaattgattctatcctccaaaagcaattatccttaaagctacaaattctagcttctagcttttctagaatcaattctaca 43342277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 13892752 - 13892850
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    |||||| |||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  13892752 tgtttgatttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 13892850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 14032877 - 14032975
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    |||||| |||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  14032877 tgtttgatttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 14032975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 35458283 - 35458185
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||| ||||| | ||| | || |||| ||||||||||||| |  || || |||||| ||||| |||||  |||| |||||||||||||||||    
T  35458283 tgtttggtttgacttttaagaattgattctatcatccaaaagcaattatccttaaaactacaaatcctaacttctagcttttctagaatcaattctaca 35458185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 44002684 - 44002742
Alignment:
Q  113 aaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    |||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  44002684 aaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 44002742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 38843154 - 38843468
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843154 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 38843253  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843254 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 38843353  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843354 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 38843453  T
Q  301 gtcttaactctcaat 315  Q
    |||||||||||||||    
T  38843454 gtcttaactctcaat 38843468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 50979438 - 50979124
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50979438 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 50979339  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50979338 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 50979239  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 300  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50979238 gacctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 50979139  T
Q  301 gtcttaactctcaat 315  Q
    |||||||||||||||    
T  50979138 gtcttaactctcaat 50979124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 51488698 - 51488384
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51488698 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaaaatag 51488599  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51488598 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 51488499  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51488498 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 51488399  T
Q  301 gtcttaactctcaat 315  Q
    |||||||||||||||    
T  51488398 gtcttaactctcaat 51488384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 27000469 - 27000155
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27000469 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatatttggtttggcttttcaaaatag 27000370  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27000369 tttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 27000270  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27000269 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 27000170  T
Q  301 gtcttaactctcaat 315  Q
    |||||||||||||||    
T  27000169 gtcttaactctcaat 27000155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 7593406 - 7593122
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7593406 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 7593307  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7593306 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctccaccctcaattctattaattccatccct 7593207  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctg 298  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||            |||||||||||||||||||||||||||||||||||||||    
T  7593206 gccctcattaatttttctaacccttctccaaccgaat-ttttctttc------------aaaataaatgttggtgaagagaataacatttattttctg 7593122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 5271706 - 5271472
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5271706 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 5271607  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5271606 cttttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 5271507  T
Q  201 gccctcattaatttttctaacccttctccaaccga 235  Q
    |||||||||||||||||||||||||||||||||||    
T  5271506 gccctcattaatttttctaacccttctccaaccga 5271472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 26821385 - 26821599
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26821385 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 26821484  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26821485 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 26821584  T
Q  201 gccctcattaatttt 215  Q
    |||||||||||||||    
T  26821585 gccctcattaatttt 26821599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 36496254 - 36496041
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36496254 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 36496155  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36496154 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 36496055  T
Q  201 gccctcattaattt 214  Q
    ||||||||||||||    
T  36496054 gccctcattaattt 36496041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 38627541 - 38627754
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38627541 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 38627640  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38627641 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccct 38627740  T
Q  201 gccctcattaattt 214  Q
    ||||||||||||||    
T  38627741 gccctcattaattt 38627754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 15353231 - 15353431
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15353231 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 15353330  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15353331 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 15353430  T
Q  201 g 201  Q
    |    
T  15353431 g 15353431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 5271331 - 5271200
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5271331 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 5271232  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  5271231 ttcatgatgttagtattgtaataccttatatt 5271200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 27000116 - 26999985
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27000116 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 27000017  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  27000016 ttcatgatgttagtattgtaataccttatatt 26999985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 38843688 - 38843819
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843688 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 38843787  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  38843788 ttcatgatgttagtattgtaataccttatatt 38843819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 50978651 - 50978520
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50978651 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 50978552  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  50978551 ttcatgatgttagtattgtaataccttatatt 50978520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 51488200 - 51488069
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51488200 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 51488101  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  51488100 ttcatgatgttagtattgtaataccttatatt 51488069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 314 - 442
Target Start/End: Original strand, 15353534 - 15353662
Alignment:
Q  314 atattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttattttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15353534 atattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttattttc 15353633  T
Q  414 atgatgttagtattataatgccttatatt 442  Q
    |||||||||||||| |||| |||||||||    
T  15353634 atgatgttagtattgtaataccttatatt 15353662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 7593030 - 7592899
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7593030 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgtactttaaattctattatctatttgtaatttttatt 7592931  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  7592930 ttcatgatgttagtattgtaataccttatatt 7592899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 27576217 - 27576348
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27576217 tcaatattttagtactatgatacacattaaattagttttgtaataaaattttaatactctattgcactttaaattctattatctatttgtaatttttatt 27576316  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    |||||  |||||||||| ||||  ||||||||    
T  27576317 ttcatactgttagtattgtaataacttatatt 27576348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 27575898 - 27576081
Alignment:
Q  2 tctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||||||| | ||| |||| |||||||  | |||| ||||||||||||| ||| |||| || |||||||||||| ||||||| ||| |    
T  27575898 tctgtttggtttggcttttgtacagctagaagcaattctacaacattccaaaagcaattctacaacatttcaatatgtttggtttgacttttcataattg 27575997  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattc 184  Q
    ||| ||||||||||||||||||||   | ||| |||||||  |||||||| ||||| |||||||||||||||||||||||||||    
T  27575998 cttctatcctccaaaagcaattctccataaagttacaatttttagcttctgacttttctagaatcaattctacaccctcaattc 27576081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 46407859 - 46407988
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  46407859 tcaatattttagtactataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 46407956  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    |||||| | |||||||| ||||  ||||||||    
T  46407957 ttcatgctattagtattgtaataacttatatt 46407988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 416
Target Start/End: Original strand, 35606701 - 35606804
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  35606701 tcaatattttagtactataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 35606798  T
Q  411 ttcatg 416  Q
    ||||||    
T  35606799 ttcatg 35606804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 47655987 - 47655888
Alignment:
Q  75 atgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    |||||||||||||||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||||||||| ||||| |||||||||||||||||    
T  47655987 atgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccttaaagctacaaatcctagcttctaacttttctagaatcaattctaca 47655888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 388 - 442
Target Start/End: Original strand, 26821785 - 26821839
Alignment:
Q  388 attatctatttgtaatttttattttcatgatgttagtattataatgccttatatt 442  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  26821785 attatctatttgtaatttttattttcatgatgttagtattgtaataccttatatt 26821839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 11051262 - 11051192
Alignment:
Q  74 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 144  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| ||||| | |||||| ||||||||||||    
T  11051262 catgtttggtttgacttttcaaaattgcttctatcctccaaaaacaattatggttgaatctacaattccta 11051192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 1762251 - 1762313
Alignment:
Q  109 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    |||||||||||||||| ||||||||||||||||||| ||| | | ||| ||||||||||||||    
T  1762251 ctccaaaagcaattctggttgaagctacaattcctaacttttaagtttactagaatcaattct 1762313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 6706132 - 6706230
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||| ||||||||||| | ||| | || |||||||||||| ||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  6706132 tgtttagtttggcttttaagaattgattctatcctccaaaaacaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 6706230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 13510038 - 13509940
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    |||||||||| |||||| | ||| | || |||||||||||||||||| |  || |||||| || |||||||||||  |||| |||||||||||||||||    
T  13510038 tgtttggtttagcttttaagaattgattctatcctccaaaagcaattatccttaaagctataaatcctagcttctagcttttctagaatcaattctaca 13509940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 11829075 - 11829172
Alignment:
Q  74 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    ||||||||||||| ||||| | ||| |||| |||||||||||||||||||| | ||||| || |||||||| ||| | | ||  ||||||||||||||    
T  11829075 catgtttggtttgccttttaagaattgcttctatcctccaaaagcaattctggatgaaggtataattcctaacttttgagttaactagaatcaattct 11829172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 46406421 - 46406519
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| || |||||| |  ||||  ||||||||||||||||    
T  46406421 tgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcttagcttttggcttttgtagaatcaattctaca 46406519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 35604814 - 35604912
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    |||||| |||| ||||| | ||| |||| |||||||||||| ||||| |  |||||||||||| |  |||||| | |||||  ||||||||||||||||    
T  35604814 tgtttgatttgacttttaagaattgcttctatcctccaaaaacaattatccttgaagctacaaatattagcttttgacttttgtagaatcaattctaca 35604912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 46033781 - 46033716
Alignment:
Q  74 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaat 139  Q
    |||||||| |||| ||||||||||| |||| |||||| ||||| |||||||  |||||| ||||||    
T  46033781 catgtttgatttgacttttcaaaattgcttctatccttcaaaaacaattctcattgaagttacaat 46033716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 24038264 - 24037950
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038264 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 24038165  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038164 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 24038065  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 300  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038064 gtcctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 24037965  T
Q  301 gtcttaactctcaat 315  Q
    |||||||||||||||    
T  24037964 gtcttaactctcaat 24037950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 39383160 - 39382846
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39383160 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 39383061  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39383060 cttttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 39382961  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39382960 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 39382861  T
Q  301 gtcttaactctcaat 315  Q
    |||||||||||||||    
T  39382860 gtcttaactctcaat 39382846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 49127590 - 49127904
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  49127590 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaatag 49127689  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49127690 cttttatcctccaaaagcaattttagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 49127789  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49127790 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 49127889  T
Q  301 gtcttaactctcaat 315  Q
    |||||||||||||||    
T  49127890 gtcttaactctcaat 49127904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 18140377 - 18140690
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18140377 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaatag 18140476  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18140477 cttttatcctccaaaagcaattttagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 18140576  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18140577 gccctcattaatttttctaacccttctccaaccgaa-tttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgca 18140675  T
Q  301 gtcttaactctcaat 315  Q
    |||||||||||||||    
T  18140676 gtcttaactctcaat 18140690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 31431238 - 31430977
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31431238 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 31431139  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31431138 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 31431039  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaa 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31431038 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaa 31430977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 24246543 - 24246777
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24246543 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattatgcaatatttaacatgtttggtttggcttttcaaaatag 24246642  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24246643 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 24246742  T
Q  201 gccctcattaatttttctaacccttctccaaccga 235  Q
    |||||||||||||||||||||||||||||||||||    
T  24246743 gccctcattaatttttctaacccttctccaaccga 24246777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 24035926 - 24035795
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24035926 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 24035827  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  24035826 ttcatgatgttagtattgtaataccttatatt 24035795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 24246918 - 24247049
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24246918 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 24247017  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  24247018 ttcatgatgttagtattgtaataccttatatt 24247049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 39382744 - 39382613
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39382744 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 39382645  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  39382644 ttcatgatgttagtattgtaataccttatatt 39382613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 49128029 - 49128160
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49128029 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 49128128  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  49128129 ttcatgatgttagtattgtaataccttatatt 49128160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 51834094 - 51833963
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    |||||||||||||| ||| ||||||||||  ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51834094 tcaatattttagtattatgatacacattaaattagttttgtaattatattttaatactctgttgcactttaaattctattatctatttgtaatttttatt 51833995  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||| || ||||| |||| ||||  ||||||||    
T  51833994 ttcttgctgttaatattgtaataacttatatt 51833963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 56560879 - 56561008
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  56560879 tcaatattttagtactataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 56560976  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    |||||| | |||||||| ||||  ||||||||    
T  56560977 ttcatgctattagtattgtaataacttatatt 56561008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 51834412 - 51834225
Alignment:
Q  11 tttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatt-taacatgtttggtttggcttttcaaaatagcttttatcc 109  Q
    |||| |||||| | ||| |||| |||||||  | |||| ||||||||||||| ||| ||| ||| |||||||||||| ||||||| ||| |||| |||||    
T  51834412 tttgacttttgtacagctagaagcaattctataacattccaaaagcaattctacaacattctaatatgtttggtttgacttttcagaattgcttctatcc 51834313  T
Q  110 tccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 197  Q
    |||||||||||||||   | ||||||||||||||| |||||  |||| |||||||||||| ||||| |||||||| || |||||||||    
T  51834312 tccaaaagcaattctccataaagctacaattcctaacttctggcttttctagaatcaattatacactctcaattccatcaattccatc 51834225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 311 - 411
Target Start/End: Complemental strand, 52056705 - 52056607
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||| ||| ||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  52056705 tcaatattttaataccataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 52056608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 53404209 - 53404111
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||||| |  ||||||| ||||||||||||||||||||  || ||||||||||||||||||| |   |||||||||||||||| ||||    
T  53404209 tgtttggtttggcttttaagcatagcttctatcctccaaaagcaattctccttaaagctacaattcctagcttttggttttcctagaatcaattttaca 53404111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 45105807 - 45105904
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||||||| ||| |||| ||||||||| ||||||||||  || |||||| ||||| |||||| || |||| |||||||||||||||||    
T  45105807 tgtttggtttggcttttcagaattgcttatatcctccagaagcaattcttcttaaagctaaaattcatagctt-ttgcttttctagaatcaattctaca 45105904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 52058350 - 52058252
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  |||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  52058350 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 52058252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 174
Target Start/End: Complemental strand, 30418490 - 30418397
Alignment:
Q  81 ggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    |||||||||||| ||||| | || |||||||||||||||||| |  || ||||||||| ||||| ||| |  ||||||||||||||||||||||    
T  30418490 ggtttggcttttaaaaattgattctatcctccaaaagcaattatccttcaagctacaaatcctaacttttagctttcctagaatcaattctaca 30418397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 22606458 - 22606362
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 172  Q
    ||||||||||  ||||| | ||| |||| |||||||||||||||||| |   ||||||||||| ||||||||| | ||||||| |||||||||||||    
T  22606458 tgtttggtttaacttttaagaattgcttctatcctccaaaagcaattattcgtgaagctacaaatcctagcttttgactttccaagaatcaattcta 22606362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 28911579 - 28911649
Alignment:
Q  74 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 144  Q
    ||||||||||||||||| ||| ||| |||| || ||||||||||||||| | | |||||||||||||||||    
T  28911579 catgtttggtttggcttatcagaattgcttctaccctccaaaagcaattgtggatgaagctacaattccta 28911649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 38767791 - 38767889
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||||  ||||| || |  |||||| |||||||||||||||    
T  38767791 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctacaaagcctagtttttggctttccaagaatcaattctaca 38767889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 53663732 - 53663635
Alignment:
Q  77 gtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||| |||||||||| | ||| | || |||||||||||||||||| |  || ||||||||||||||| ||| |  |||||||| |||||||||||||    
T  53663732 gtttgatttggctttttagaattgattctatcctccaaaagcaattatccttaaagctacaattcctaacttttggctttcctataatcaattctaca 53663635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 28963966 - 28963870
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 172  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||| |||||  |||| |||||||||||||||    
T  28963966 tgtttggtttgacttttaagaattgattatatcctccaaaagcaattattcttaaagctacaaatcctaacttctagcttttctagaatcaattcta 28963870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 16203159 - 16203097
Alignment:
Q  109 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    |||||||||||||| | ||||||||||||||||||||||| | | ||  ||||||||||||||    
T  16203159 ctccaaaagcaattttggttgaagctacaattcctagcttttgagttgactagaatcaattct 16203097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 39732843 - 39732905
Alignment:
Q  109 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    |||||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  39732843 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 39732905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 50523936 - 50523874
Alignment:
Q  109 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    |||||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  50523936 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 50523874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 49723784 - 49723855
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 148  Q
    ||||||||||||||||| | ||| | || ||||||||||||| |||||| ||| |||||||||||| ||||||    
T  49723784 tgtttggtttggcttttaagaattgtttctatcctccaaaag-aattctcgttaaagctacaattcttagctt 49723855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 5937908 - 5937846
Alignment:
Q  109 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    |||||||||||||| | | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  5937908 ctccaaaagcaattatggatgaagctacaattcctagcttttgagttagctagaatcaattct 5937846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 26457118 - 26457183
Alignment:
Q  83 tttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 148  Q
    |||| ||||||| ||| ||||||||||||||||| |||||    |||||||||||||| |||||||    
T  26457118 tttgacttttcagaattgcttttatcctccaaaaacaatttcgattgaagctacaatttctagctt 26457183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 25341647 - 25341355
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25341647 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 25341548  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25341547 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccattcct 25341448  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttatt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25341447 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttatt 25341355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 31012605 - 31012375
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31012605 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 31012506  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31012505 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 31012406  T
Q  201 gccctcattaatttttctaacccttctccaa 231  Q
    |||||||||||||||||||||||||||||||    
T  31012405 gccctcattaatttttctaacccttctccaa 31012375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 25341302 - 25341171
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25341302 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 25341203  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  25341202 ttcatgatgttagtattgtaataccttatatt 25341171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 31012321 - 31012190
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31012321 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 31012222  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  31012221 ttcatgatgttagtattgtaataccttatatt 31012190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 41064854 - 41064985
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41064854 tcaatattttagtactatgatacacattaaattagttttgtaataatattttaatactctattgcactttaaattctattatctatttctaatttttatt 41064953  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    |||||| | |||||||| ||||  ||||||||    
T  41064954 ttcatgcttttagtattctaataacttatatt 41064985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 41064585 - 41064717
Alignment:
Q  53 aagcaattctgcaatatt-taacatgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttctt 151  Q
    |||||||||| ||| ||| ||| |||||||||||| ||||||| ||| |||| |||||||||||| |||||||   | |||||||||||||||||||||     
T  41064585 aagcaattctacaacattctaatatgtttggtttgccttttcataattgcttctatcctccaaaaacaattctccataaagctacaattcctagcttctg 41064684  T
Q  152 actttcctagaatcaattctacaccctcaattc 184  Q
    ||||| |||||||||||||||||||||||||||    
T  41064685 acttttctagaatcaattctacaccctcaattc 41064717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 319 - 442
Target Start/End: Original strand, 12910305 - 12910426
Alignment:
Q  319 ttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttattttcatgat 418  Q
    ||||||||||||||||| |||  |||||||||||||||||||  | |||| | ||||| ||||||||||||||||||||||||||||||||||||||| |    
T  12910305 ttagtactataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttattttcatgct 12910402  T
Q  419 gttagtattataatgccttatatt 442  Q
     |||||||| ||||  ||||||||    
T  12910403 attagtattgtaataacttatatt 12910426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 25970433 - 25970531
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||||| | ||| |||| ||||||||||||| ||||||  || ||||||||||||||||||| |  ||||| ||||||||||||||||    
T  25970433 tgtttggtttggcttttaagaattgcttctatcctccaaaagtaattctctttaaagctacaattcctagcttttggctttcttagaatcaattctaca 25970531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 39857075 - 39857172
Alignment:
Q  74 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    ||||||||||||| ||||||| ||| |||| ||||||||||||| |||||| | |||||||||||||| |||||| | | ||  ||||||||||||||    
T  39857075 catgtttggtttgacttttcagaattgcttctatcctccaaaagtaattctggatgaagctacaattcatagcttttgagttaactagaatcaattct 39857172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 37371078 - 37371177
Alignment:
Q  75 atgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    |||||||||||||||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||| |||||  |||| |||||||||||||||||    
T  37371078 atgtttggtttggcttttaagaattggttctatcctccaaaagcaattatctttaaagctacaaatcctaacttctagcttttctagaatcaattctaca 37371177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 14999868 - 14999966
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||||| | ||| | || ||||||||||||| ||||||  || |||||||||||||||  || |  ||||||||||||||||||||||    
T  14999868 tgtttggtttggctttttagaattgattctatcctccaaaagtaattctccttaaagctacaattcctaatttttggctttcctagaatcaattctaca 14999966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 30825190 - 30825288
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||| ||||| | ||| |||| |||||||||||| |||||||  || ||| ||||||||||||||| |  |||||| |||||||||||||||    
T  30825190 tgtttggtttgcctttttagaattgcttctatcctccaaaaacaattctccttaaagttacaattcctagcttttggctttccaagaatcaattctaca 30825288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 26826384 - 26826480
Alignment:
Q  78 tttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||||||| | |||  ||| ||||||||||||| ||||||  || ||| ||||||||||| ||| || |||||||| |||||||||||||    
T  26826384 tttggtttggcttttaagaattacttctatcctccaaaagtaattctccttaaaggtacaattcctaactttttcctttcctataatcaattctaca 26826480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 25472863 - 25472765
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |  |||||||||||| || ||||||||   ||| |||||||||||||||||    
T  25472863 tgtttggtttgacttttaagaattgattctatcctccaaaagcaattatccttgaagctacaaatcatagcttctacattttctagaatcaattctaca 25472765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 12909229 - 12909327
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  12909229 tgtttggtttgacttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 12909327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 43664912 - 43664814
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    |||||| ||| |||||||| |||   || |||||||||||||||||| |  || ||||||||||| ||| | | | |||||||||||||||||||||||    
T  43664912 tgtttgttttagcttttcagaattcattctatcctccaaaagcaatttttcttaaagctacaatttctaacctttgactttcctagaatcaattctaca 43664814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 432
Target Start/End: Complemental strand, 47238805 - 47238757
Alignment:
Q  384 ttctattatctatttgtaatttttattttcatgatgttagtattataat 432  Q
    |||||||||||||||||||||||||||| |||| | |||||||| ||||    
T  47238805 ttctattatctatttgtaatttttatttccatggtattagtattgtaat 47238757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 393
Target Start/End: Original strand, 40725766 - 40725817
Alignment:
Q  342 ttagttttgtaataatattttaatactctattgcactttaaattctattatc 393  Q
    ||||||||||||| |||||||| |||| |||| |||| ||||||||||||||    
T  40725766 ttagttttgtaatgatattttagtactatattacactataaattctattatc 40725817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 19544572 - 19544634
Alignment:
Q  109 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    ||||||||| |||| | |||||||||||||||| |||||| | | ||| ||||||||||||||    
T  19544572 ctccaaaagtaattatggttgaagctacaattcatagcttttgagtttactagaatcaattct 19544634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 30018776 - 30019072
Alignment:
Q  1 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30018776 ctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatag 30018875  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30018876 cttttatcctccaaaagcaattctagttgaagctacaattcctatcttcttactttcctagaatcaattctacaccctcaattctattaattccatccct 30018975  T
Q  201 gccctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttct 297  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30018976 gtcctcattaatttttctaacccttctccaaccgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttct 30019072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 30019591 - 30019722
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30019591 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 30019690  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    ||||||||||||||||| |||| |||||||||    
T  30019691 ttcatgatgttagtattgtaataccttatatt 30019722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 31746043 - 31745911
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttg-taataatattttaatactctattgcactttaaattctattatctatttgtaatttttat 409  Q
    |||||||||||||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31746043 tcaatattttagtactatgatacacattaaattagttttggtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttat 31745944  T
Q  410 tttcatgatgttagtattataatgccttatatt 442  Q
    ||||||| |||||||||| ||||  ||||||||    
T  31745943 tttcatgctgttagtattgtaataacttatatt 31745911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 21515415 - 21515286
Alignment:
Q  311 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 410  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  21515415 tcaatattttagtactataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 21515318  T
Q  411 ttcatgatgttagtattataatgccttatatt 442  Q
    |||||| | |||||||| ||||  ||||||||    
T  21515317 ttcatgctattagtattgtaataacttatatt 21515286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 184
Target Start/End: Complemental strand, 31746359 - 31746179
Alignment:
Q  2 tctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggcttttcaaaatag 100  Q
    |||||||||||||||||||| | |   |||| |||||||  | | |||||||||||||||| ||| |||  || |||||||||||| ||||||||||| |    
T  31746359 tctgtttggtttggcttttgtaca---agaagcaattctacaacttttcaaaagcaattctacaacattccaatatgtttggtttgacttttcaaaattg 31746263  T
Q  101 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattc 184  Q
    ||| ||||||||||||||||||||   |  |||||||||||||| ||| |  |||| ||||||||||||||||| |||||||||    
T  31746262 cttctatcctccaaaagcaattctccatatagctacaattcctaacttatggcttttctagaatcaattctacatcctcaattc 31746179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 4146810 - 4146907
Alignment:
Q  74 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    ||||||||||||||||||||| ||| |||| || || |||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  4146810 catgtttggtttggcttttcagaattgcttctaccccccaaaagcaattctggatgaagctacaattcctagcttttgagttaactagaatcaattct 4146907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 21517455 - 21517357
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  21517455 tgtttggtttgacttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 21517357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 30134180 - 30134219
Alignment:
Q  109 ctccaaaagcaattctagttgaagctacaattcctagctt 148  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  30134180 ctccaaaagcaattctggttgaagctacaatttctagctt 30134219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 365591 - 365689
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||||||||| ||||| | ||| | || |||| ||||||||||||| |  || ||||||||| ||||| ||||| ||||| ||||| |||||| ||||    
T  365591 tgtttggtttgacttttaagaattgattctatcatccaaaagcaattatccttaaagctacaaatcctaacttctaacttttctagactcaattttaca 365689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 20838560 - 20838498
Alignment:
Q  109 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    |||||||||||||||| ||||||||||||| ||||| ||| | | ||| ||| ||||||||||    
T  20838560 ctccaaaagcaattctggttgaagctacaaatcctaacttttgagtttactataatcaattct 20838498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 27825057 - 27825119
Alignment:
Q  109 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 171  Q
    |||||||||||||| | ||||||||||||||||||| ||| | | ||  ||||||||||||||    
T  27825057 ctccaaaagcaattatggttgaagctacaattcctaacttttcagttaactagaatcaattct 27825119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 16815 - 16883
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 144  Q
    ||||||||||||||||| | ||| | || ||||||||||||||||||||| || |||||||||||||||    
T  16815 tgtttggtttggctttttagaattgattctatcctccaaaagcaattctaattaaagctacaattccta 16883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 91535 - 91634
Alignment:
Q  77 gtttggtttggcttttcaaaatagcttttatcctccaaaagca--attctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    |||||||||||||||| | ||| | || |||||||||||||||  |||||| || ||||||||||||||| ||| |  ||||| |||||  |||||||||    
T  91535 gtttggtttggctttttagaattgattctatcctccaaaagcaatattctacttaaagctacaattcctaacttttggctttcatagaacaaattctaca 91634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 4090 - 4188
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 174  Q
    ||||| ||||||||||| | ||| | || ||||||| |||||||||| |  || |||||| || |||||||||||  |||| ||| |||||||||||||    
T  4090 tgtttagtttggcttttaagaattgattctatcctcgaaaagcaattatcattaaagctaaaaatcctagcttctagcttttctaaaatcaattctaca 4188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 37697 - 37791
Alignment:
Q  76 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 172  Q
    ||||||||||||||||| | ||| | || |||||||||||| ||||| |  || ||||||||| |  ||||||||  |||| |||||||||||||||    
T  37697 tgtttggtttggcttttaagaattgattctatcctccaaaaacaattatcctttaagctacaaat--tagcttctagcttttctagaatcaattcta 37791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University