View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_high_19 (Length: 446)
Name: NF2700_high_19
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 16 - 429
Target Start/End: Original strand, 43223539 - 43223955
Alignment:
| Q |
16 |
atcaatgggcaccattacctatttggtgaagcaatgttttaaagtgatgggatct----gaattttattcaatgaacaatgttggaaataaaatgttgag |
111 |
Q |
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| T |
43223539 |
atcaatgggcaccattacctatttggtgaagca-tgttttaaagtgatgggatctatatgaattttattcaatgaacaatgttggaaataaaatgttgag |
43223637 |
T |
|
| Q |
112 |
gagcatattgttagtcaaatatatgaccgactggacataaaattatcttaatcaaattgccgacatacttcttaaaattgagatttatttatagtaacag |
211 |
Q |
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| T |
43223638 |
gagcatattgttagtcaaatatatgaccgactggacataaaattatcttaatcaaattgccgacatacttcttaaaattgagatttatttatagtaacag |
43223737 |
T |
|
| Q |
212 |
gatatgtgcctttttaattgagttcagcttactaacataaacaaaggcactgtcttctgagaatctcaatttgaaaaatgacaattaaggagaagaatag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43223738 |
gatatgtgcctttttaattgagttcagcttactaacataaacaaaggcactgtcttctgagaatctcaatttgaaaaatgacaattaaggagaagaatag |
43223837 |
T |
|
| Q |
312 |
acaactcctagtactactataacacagattccagagaccaaagtcaaactagtgacatcgagggttctcgttttctgaaacacgtggagataacagaaca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43223838 |
acaactcctagtactactataacacagattccagagaccaaagtcaaactagtgacatcgagggttctcgttttctgaaacacgtggagataacagaaca |
43223937 |
T |
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| Q |
412 |
tgcccatgtggtatacct |
429 |
Q |
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|||||||||||||||||| |
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| T |
43223938 |
tgcccatgtggtatacct |
43223955 |
T |
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