View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700_high_2 (Length: 813)

Name: NF2700_high_2
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700_high_2
NF2700_high_2
[»] chr3 (15 HSPs)
chr3 (7-547)||(50522807-50523354)
chr3 (615-690)||(50523422-50523497)
chr3 (219-316)||(45532649-45532747)
chr3 (219-313)||(1679268-1679363)
chr3 (219-313)||(42464520-42464615)
chr3 (219-302)||(10224738-10224822)
chr3 (219-313)||(28705173-28705268)
chr3 (219-313)||(52505410-52505505)
chr3 (157-226)||(1679122-1679191)
chr3 (219-320)||(48123254-48123355)
chr3 (157-226)||(10224592-10224661)
chr3 (224-308)||(25936670-25936755)
chr3 (165-226)||(28705345-28705406)
chr3 (167-226)||(45532513-45532572)
chr3 (169-226)||(52505276-52505333)
[»] chr4 (18 HSPs)
chr4 (7-547)||(54433314-54433864)
chr4 (615-690)||(54433171-54433246)
chr4 (219-314)||(41146041-41146136)
chr4 (615-690)||(562470-562545)
chr4 (219-316)||(52122526-52122624)
chr4 (219-313)||(3403161-3403256)
chr4 (219-313)||(8063684-8063779)
chr4 (219-308)||(53322781-53322871)
chr4 (219-313)||(31226774-31226869)
chr4 (219-313)||(14795443-14795538)
chr4 (152-226)||(53322948-53323022)
chr4 (157-226)||(8063538-8063607)
chr4 (219-302)||(52572637-52572721)
chr4 (157-226)||(14795615-14795684)
chr4 (157-226)||(31226946-31227015)
chr4 (116-226)||(41146213-41146323)
chr4 (157-226)||(3403015-3403084)
chr4 (163-226)||(52122386-52122449)
[»] chr7 (13 HSPs)
chr7 (7-547)||(25557389-25557938)
chr7 (615-690)||(25557246-25557321)
chr7 (219-316)||(27397704-27397802)
chr7 (225-316)||(11830121-11830213)
chr7 (219-313)||(40096093-40096188)
chr7 (227-316)||(38265130-38265220)
chr7 (227-308)||(36660907-36660989)
chr7 (219-313)||(39521206-39521301)
chr7 (157-226)||(40096265-40096334)
chr7 (163-226)||(27397564-27397627)
chr7 (166-226)||(11830296-11830356)
chr7 (157-214)||(11058547-11058604)
chr7 (157-226)||(36661072-36661141)
[»] chr2 (15 HSPs)
chr2 (342-547)||(29825952-29826155)
chr2 (219-316)||(4170109-4170207)
chr2 (219-316)||(38601977-38602075)
chr2 (225-316)||(33325186-33325278)
chr2 (219-316)||(6497259-6497357)
chr2 (219-302)||(22484714-22484798)
chr2 (228-313)||(6124623-6124709)
chr2 (219-308)||(40308425-40308515)
chr2 (157-226)||(40308279-40308348)
chr2 (628-690)||(29825808-29825873)
chr2 (116-226)||(4169922-4170032)
chr2 (157-222)||(6497113-6497178)
chr2 (157-220)||(22484881-22484944)
chr2 (28-80)||(32750837-32750887)
chr2 (157-212)||(6124787-6124842)
[»] chr6 (8 HSPs)
chr6 (219-316)||(8357314-8357411)
chr6 (219-313)||(1036403-1036498)
chr6 (219-313)||(7188367-7188462)
chr6 (157-226)||(1036257-1036326)
chr6 (157-226)||(7188221-7188290)
chr6 (157-226)||(8357488-8357557)
chr6 (157-226)||(22989068-22989137)
chr6 (157-226)||(23799259-23799328)
[»] chr1 (20 HSPs)
chr1 (219-321)||(25257034-25257137)
chr1 (219-313)||(8132606-8132701)
chr1 (224-316)||(30324142-30324235)
chr1 (219-313)||(6916451-6916546)
chr1 (219-313)||(38330873-38330968)
chr1 (219-313)||(52895290-52895385)
chr1 (219-313)||(28658895-28658990)
chr1 (219-316)||(1043595-1043693)
chr1 (228-313)||(3427296-3427382)
chr1 (219-308)||(5984616-5984706)
chr1 (157-226)||(6916305-6916374)
chr1 (157-226)||(8132778-8132847)
chr1 (157-226)||(38331045-38331114)
chr1 (157-226)||(52895144-52895213)
chr1 (157-226)||(25257214-25257283)
chr1 (167-226)||(5984783-5984842)
chr1 (157-226)||(28948650-28948719)
chr1 (157-226)||(30324317-30324385)
chr1 (157-212)||(3427460-3427515)
chr1 (181-226)||(1043770-1043815)
[»] scaffold0177 (2 HSPs)
scaffold0177 (219-320)||(25207-25309)
scaffold0177 (166-226)||(25069-25129)
[»] scaffold0037 (2 HSPs)
scaffold0037 (219-316)||(27373-27471)
scaffold0037 (166-226)||(27236-27296)
[»] scaffold0112 (2 HSPs)
scaffold0112 (219-314)||(41671-41767)
scaffold0112 (165-226)||(41533-41594)
[»] scaffold0640 (2 HSPs)
scaffold0640 (219-316)||(7744-7842)
scaffold0640 (163-226)||(7604-7667)
[»] chr5 (14 HSPs)
chr5 (219-316)||(32707488-32707586)
chr5 (224-316)||(1639381-1639474)
chr5 (219-313)||(9792732-9792827)
chr5 (219-313)||(12852546-12852641)
chr5 (219-313)||(30918788-30918883)
chr5 (219-302)||(26794580-26794664)
chr5 (219-313)||(33830197-33830292)
chr5 (157-226)||(9792904-9792973)
chr5 (157-226)||(26794434-26794503)
chr5 (163-226)||(1639236-1639299)
chr5 (157-226)||(12852718-12852787)
chr5 (157-226)||(39690172-39690241)
chr5 (163-226)||(32707348-32707411)
chr5 (163-222)||(33830373-33830432)
[»] scaffold0060 (1 HSPs)
scaffold0060 (219-313)||(30024-30119)
[»] chr8 (20 HSPs)
chr8 (219-313)||(4246363-4246458)
chr8 (219-313)||(28876154-28876249)
chr8 (219-313)||(34900958-34901053)
chr8 (219-316)||(2872574-2872672)
chr8 (227-316)||(12580132-12580222)
chr8 (219-316)||(36483856-36483954)
chr8 (219-316)||(37669001-37669099)
chr8 (219-313)||(5539856-5539951)
chr8 (219-313)||(45216809-45216904)
chr8 (228-313)||(43771290-43771376)
chr8 (157-226)||(4246535-4246604)
chr8 (157-226)||(5540028-5540097)
chr8 (157-226)||(34900812-34900881)
chr8 (157-226)||(45216663-45216732)
chr8 (169-223)||(2872440-2872494)
chr8 (157-215)||(37669187-37669245)
chr8 (157-226)||(12579978-12580047)
chr8 (157-222)||(36484035-36484100)
chr8 (157-212)||(43771157-43771212)
chr8 (168-226)||(28876019-28876077)
[»] scaffold0005 (2 HSPs)
scaffold0005 (219-313)||(44193-44288)
scaffold0005 (157-226)||(44047-44116)


Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 7 - 547
Target Start/End: Original strand, 50522807 - 50523354
Alignment:
Q  7 tccaagaatatcatcttcagcactacccaaaaaggacatagtttagctattcataaagaacatcatagtccaacattcactacttaagaagaaacacgga 106  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  50522807 tccaaaaaaatcatcatcagcactacccaaaaaggacatagtttagctattcataaagaacatcatagtccaacattcactccttaagaggaaacacgga 50522906  T
Q  107 ctgtatcagtctcctctcctccgtttccataatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaacaac 206  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50522907 ctgtatcagtctcctctcctctgtttccatcatcaaagaacattgtagcctccaacttcggttcatctaaagataactcagctaattcaattccaacaac 50523006  T
Q  207 atcaagcgggtcatgcgcataaaccaaatcttcaaccc--ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaattttt 304  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  50523007 atcaagcgggtcatgcgcataaaccaaatcttcaacccctttttggatccattttatttcttttgaaataatgaataaaagagtaagtactccaattttt 50523106  T
Q  305 ctcagaacatgatgaatttcatacctgaactcccatcaattttcaataagtgaaatcttgctctagagtatgaactcctcgcctcnnnnnnngacaaaag 404  Q
     ||| |||||||||||   |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||    
T  50523107 ttcaaaacatgatgaagaacatacctgaactcccagcaattttcaataagtgaaatcttgctctagagtatgaactcctcacctc--tttttgacaaaag 50523204  T
Q  405 ttgcacctccaaagcttgtttccacctacagaatcattattctgcacc------acagtgacaaatctccatagtggtttactatcatctt-ggggttct 497  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||| ||||||||    
T  50523205 ttgcacctccaaagcttgtttccatctgcagaatcattattctgcaccacagtgacagtgacaaatctccatagtggtttactatcatcttgggggttct 50523304  T
Q  498 tttgaagctaacgaactagtaacactttcttcaattgaagacataactat 547  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  50523305 tttgaagcaaacgaactagtaacactttcttcaattgaagacataactat 50523354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 615 - 690
Target Start/End: Original strand, 50523422 - 50523497
Alignment:
Q  615 ctagggtttattgtttacatgtgctaaaaacaatcattaatacaaacaatcttattaagaagaaagtaaacatttt 690  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50523422 ctagggtttattgtttacatatgctaaaaacaatcattaatacaaacaatcttattaagaagaaagtaaacatttt 50523497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 45532649 - 45532747
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  45532649 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 45532747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 1679268 - 1679363
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  1679268 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 1679363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 42464520 - 42464615
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  42464520 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 42464615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 10224738 - 10224822
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaattt 302  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||| |||| ||| |||||    
T  10224738 atgcacataaaccaaatcttctaccctttttggatccattttatttcttttcaaagaatggataaaagagaaagtgctcaaattt 10224822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 28705268 - 28705173
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| ||||||| |||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  28705268 atgcacataaacaaaatcttctaccctttttggatccattttgtttcttttaaaagaatggataaaagagaaagtactcaaatttctctcacaaca 28705173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 52505410 - 52505505
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| ||||||||  ||| ||| ||||||||| |||||||| ||||| ||||| ||||    
T  52505410 atgcacataaaccaaatcttctaccctttttggatccattttgtttctttttcaagtatggataaaagagaaagtactcaaatttctctcacaaca 52505505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 1679122 - 1679191
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  1679122 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 1679191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 219 - 320
Target Start/End: Complemental strand, 48123355 - 48123254
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccc--ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||| |||||||||||||||| ||||  ||||||||||||||| ||  |||| |||||||| ||||||||| |||||||| ||||| ||||| |||| ||    
T  48123355 atgcacataaaccaaatcttctacccttttttggatccattttgtt--ttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacagga 48123258  T
Q  317 tgaa 320  Q
    ||||    
T  48123257 tgaa 48123254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 10224592 - 10224661
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| || |||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  10224592 tccaaatctggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 10224661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 25936670 - 25936755
Alignment:
Q  224 cataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctca 308  Q
    |||||||||||||||| |  ||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| | ||||| |||||    
T  25936670 cataaaccaaatcttctattctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccctaatttctctca 25936755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 28705406 - 28705345
Alignment:
Q  165 cggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  28705406 cggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 28705345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 45532513 - 45532572
Alignment:
Q  167 gttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  45532513 gttcatccaaagacaactctgctaactcaattccaacatcatcaagcggttcatgcgcat 45532572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 52505276 - 52505333
Alignment:
Q  169 tcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  52505276 tcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 52505333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 7 - 547
Target Start/End: Complemental strand, 54433864 - 54433314
Alignment:
Q  7 tccaagaatatcatcttcagcactacccaaaaaggacatagtttagctattcataaagaacatcatagtccaacattcactacttaagaagaaacacgga 106  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  54433864 tccaaaaaaatcatcatcagcactacccaaaaaggacatagtttagctattcataaagaacatcatagtccaacattcactacttaagaggaaacaagga 54433765  T
Q  107 ctgtatcagtctcctctcctccgtttccataatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaacaac 206  Q
     ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||      
T  54433764 ttgtatcagtctcctctcctccgtttccatcatcaaagaacattgtagtctccaactccgattcatctaaagataactcagctaattcaattccaacaca 54433665  T
Q  207 atcaagcgggtcatgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttc 305  Q
    ||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  54433664 atcaagcaggtcatgcgcataaaccacatcttcaaccctttttggatccattttatttcttttcaaagaataaataaaagagtaagtactccaatttttc 54433565  T
Q  306 tcagaacatgatgaatttcatacctgaactcc-----catcaattttcaataagtgaaatcttgctctagagtatgaactcctcgcctcnnnnnnngaca 400  Q
    |||||||||||||||   ||||||||||||||     || |||||||||||||||||||||| |||||| |||||||||||||| ||||       ||||    
T  54433564 tcagaacatgatgaagaacatacctgaactccttcaccagcaattttcaataagtgaaatctcgctctaaagtatgaactcctcacctc--tttttgaca 54433467  T
Q  401 aaagttgcacctccaaagcttgtttccacctacagaatcattattctgcacc------acagtgacaaatctccatagtggtttactatcatcttggggt 494  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||    
T  54433466 aaagttgcacctccaaagcttgtttccacctgcagaatcattattctgcaccacagtgacagtgacaaatctccatagtggtttactatcatcttggggt 54433367  T
Q  495 tcttttgaagctaacgaactagtaacactttcttcaattgaagacataactat 547  Q
    ||||||||||| |||||||||||||||||||||||||||| || |||||||||    
T  54433366 tcttttgaagcaaacgaactagtaacactttcttcaattggaggcataactat 54433314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 615 - 690
Target Start/End: Complemental strand, 54433246 - 54433171
Alignment:
Q  615 ctagggtttattgtttacatgtgctaaaaacaatcattaatacaaacaatcttattaagaagaaagtaaacatttt 690  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  54433246 ctagggtttattgtttacatatgctaaaaacaatcattaatacaaacaatcttataaagaagaaagtaaacatttt 54433171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 219 - 314
Target Start/End: Complemental strand, 41146136 - 41146041
Alignment:
Q  219 atgcgcataaaccaaatcttcaacccttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacat 314  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||||||||| ||||| |||||    
T  41146136 atgcacataaaccaaatcttctacccttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactccaatttctctcacaacat 41146041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 615 - 690
Target Start/End: Original strand, 562470 - 562545
Alignment:
Q  615 ctagggtttattgtttacatgtgctaaaaacaatcattaatacaaacaatcttattaagaagaaagtaaacatttt 690  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||  ||||||||||||||||||||    
T  562470 ctagggtttattgtttacatatgctaaagacaatcattaatacaaacaatcttacaaagaagaaagtaaacatttt 562545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 52122526 - 52122624
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  52122526 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 52122624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 3403161 - 3403256
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  3403161 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 3403256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 8063684 - 8063779
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  8063684 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 8063779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 219 - 308
Target Start/End: Complemental strand, 53322871 - 53322781
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctca 308  Q
    |||| |||||||||||||||| | |||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||||||||| |||||    
T  53322871 atgcacataaaccaaatcttctatcctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactccaatttctctca 53322781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 31226869 - 31226774
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||  ||||||||| |||||||| ||||| ||||| ||||    
T  31226869 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaattgataaaagagaaagtactcaaatttctctcacaaca 31226774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 14795538 - 14795443
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||| ||| |||||||| ||||||||||| |||||||| ||||| || ||||||||| |||||||| ||||| ||||| ||||    
T  14795538 atgcacataaaccaaattttctaccctttttggatccattttgtttctttttaaagactggataaaagagaaagtactcaaatttctctcacaaca 14795443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 53323022 - 53322948
Alignment:
Q  152 tagcctccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    |||| ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  53323022 tagcttccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 53322948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 8063538 - 8063607
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  8063538 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 8063607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 52572721 - 52572637
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaattt 302  Q
    |||| |||||||||||||||| | |||||| ||||||||||| |||||||| |||||||| ||||||||| |||| ||| |||||    
T  52572721 atgcacataaaccaaatcttctatcctttttggatccattttgtttcttttcaaagaatggataaaagagaaagttctctaattt 52572637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 14795684 - 14795615
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||| | |||||||||| ||||||||||    
T  14795684 tccaaatccggttcatccaaagacaactctgctaactcaattccaatatcatcaagcggttcatgcgcat 14795615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 31227015 - 31226946
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| || |||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  31227015 tccaaatctggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 31226946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 41146323 - 41146213
Alignment:
Q  116 tctcctctcctccgtttccataatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgg 215  Q
    ||||||||||||| || ||||||||||   |||    ||| ||||| ||||| ||||| ||||| ||||| ||||| |||||||||||| |||||||||     
T  41146323 tctcctctcctccattcccataatcaagatacaaatcagcttccaaatccggatcatccaaagacaactctgctaactcaattccaacaccatcaagcgt 41146224  T
Q  216 gtcatgcgcat 226  Q
     ||||||||||    
T  41146223 ttcatgcgcat 41146213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 3403015 - 3403084
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| || || ||||  ||||| |||||||||||| |||||||||| ||||||||||    
T  3403015 tccaaatccggttcatccaaggacaactttgctaactcaattccaacaccatcaagcggttcatgcgcat 3403084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 52122386 - 52122449
Alignment:
Q  163 tccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||||||||  ||||| ||||  ||||| |||||||||||| |||||||||| ||||||||||    
T  52122386 tccggttcattcaaagacaactatgctaactcaattccaacaccatcaagcggttcatgcgcat 52122449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 7 - 547
Target Start/End: Complemental strand, 25557938 - 25557389
Alignment:
Q  7 tccaagaatatcatcttcagcactacccaaaaaggacatagtttagctattcataaagaacatcatagtccaacattcactacttaagaagaaacacgga 106  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  25557938 tccaaaaaaatcatcatcagcactacccaaaaaggacatagtttagctattcataaagaacatcatagtccaacattcactacttaagaggaaacactga 25557839  T
Q  107 ctgtatcagtctcctctcctccgtttccataatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaacaac 206  Q
     |||||| ||||||||||||| |||||||| |||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  25557838 ttgtatcggtctcctctcctctgtttccatcatcaaagaacattaaagcctccaactctggttcatctaaagataactcagctaattcaattccaacacc 25557739  T
Q  207 atcaagcgggtcatgcgcataaaccaaatcttcaaccc-ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttc 305  Q
    |||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  25557738 atcaagtgggtcatgcgcataaaccaaatcttcagccctttttggatccattttatttcttttcaaagaatgaataaaagagtaagtactccaatttctc 25557639  T
Q  306 tcagaacatgatgaatttcatacctgaactc-----ccatcaattttcaataagtgaaatcttgctctagagtatgaactcctcgcctcnnnnnnngaca 400  Q
    |||||||||||||||   |||||||||||||     |||||||||||||||||||||||||| ||||||||||||||||||||| ||||       ||||    
T  25557638 tcagaacatgatgaagaacatacctgaactccttcaccatcaattttcaataagtgaaatctcgctctagagtatgaactcctcacctc--tttttgaca 25557541  T
Q  401 aaagttgcacctccaaagcttgtttccacctacagaatcattattctgcaccac------agtgacaaatctccatagtggtttactatcatcttggggt 494  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||| |    
T  25557540 aaagttgcacctccaaagcttgttcccacctgcagaatcattattctgcaccacagtgatagtgacaaatctccatagtggtttactatcatcttgggat 25557441  T
Q  495 tcttttgaagctaacgaactagtaacactttcttcaattgaagacataactat 547  Q
    ||||||||||| |||||||||| ||||||||||||||||| || |||||||||    
T  25557440 tcttttgaagcaaacgaactag-aacactttcttcaattggaggcataactat 25557389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 615 - 690
Target Start/End: Complemental strand, 25557321 - 25557246
Alignment:
Q  615 ctagggtttattgtttacatgtgctaaaaacaatcattaatacaaacaatcttattaagaagaaagtaaacatttt 690  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25557321 ctagggtttattgtttacatatgctaaaaacaatcattaatacaaacaatcttactaagaagaaagtaaacatttt 25557246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 27397704 - 27397802
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||| |||||||||||||||| |||||||| ||||||||||| ||||||||  ||||||| ||||||||| |||||||||||||| ||||| |||||||    
T  27397704 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttctaagaatggataaaagagaaagtactccaatttctctcacaacatga 27397802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 225 - 316
Target Start/End: Complemental strand, 11830213 - 11830121
Alignment:
Q  225 ataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||| ||| |||||||||||||| ||||| |||||||    
T  11830213 ataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaatgagaaagtactccaatttctctcacaacatga 11830121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 40096188 - 40096093
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  40096188 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 40096093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 38265220 - 38265130
Alignment:
Q  227 aaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    ||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  38265220 aaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 38265130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 36660989 - 36660907
Alignment:
Q  227 aaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctca 308  Q
    ||||||||||||| ||| |||| ||||||||||| |||||||| |||||||| ||||||||| |||||||||||||| |||||    
T  36660989 aaaccaaatcttctaccatttttggatccattttctttcttttcaaagaatggataaaagagaaagtactccaatttctctca 36660907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 39521301 - 39521206
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccc-ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||| ||||||||| ||||| |||||||| |||||||  ||||||||| |||||||| ||||| ||||| ||||    
T  39521301 atgcacataaaccaaatcttctaccctttttggatctattttgtttcttttcaaagaatagataaaagagaaagtactcaaatttctctcacaaca 39521206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 40096334 - 40096265
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  40096334 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 40096265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 27397564 - 27397627
Alignment:
Q  163 tccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  27397564 tccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 27397627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 11830356 - 11830296
Alignment:
Q  166 ggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    |||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  11830356 ggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 11830296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 11058604 - 11058547
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcg 214  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||    
T  11058604 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcg 11058547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 36661141 - 36661072
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| |||||  |||| |||||||||||| |||||| ||| ||||||||||    
T  36661141 tccaaatccggttcatccaaagacaactcttctaactcaattccaacaccatcaaacggttcatgcgcat 36661072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 342 - 547
Target Start/End: Complemental strand, 29826155 - 29825952
Alignment:
Q  342 aattttcaataagtgaaatcttgctctagagtatgaactcctcgcctcnnnnnnngacaaaagttgcacctccaaagcttgtttccacctacagaatcat 441  Q
    |||||||||||||||||||||  ||||||||||||||||| || ||||       ||||||||||||||||||||||||||||||||| | |||||||||    
T  29826155 aattttcaataagtgaaatctcactctagagtatgaactcttcacctcttatt--gacaaaagttgcacctccaaagcttgtttccacatgcagaatcat 29826058  T
Q  442 tattctgcaccacagtgacaaatctccatagtggtttactatcatcttggggttcttttgaagctaacgaactagtaacactttcttcaattgaagacat 541  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||||||||| | || || |||    
T  29826057 tattctgcaccacagtgacaaatctccatagtggtttactatcatcttagagttcttttgaagcaaacgaagtagtaacactttcttctactggaggcat 29825958  T
Q  542 aactat 547  Q
    ||||||    
T  29825957 aactat 29825952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 4170109 - 4170207
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  4170109 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 4170207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 38601977 - 38602075
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  38601977 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 38602075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 225 - 316
Target Start/End: Complemental strand, 33325278 - 33325186
Alignment:
Q  225 ataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  33325278 ataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 33325186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 6497259 - 6497357
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||| |||||||||||||||| |||||||| ||||||||||| ||| |||| |||||||| ||||||||  |||||||||||||| ||||| |||||||    
T  6497259 atgcacataaaccaaatcttctaccctttttggatccattttgtttattttcaaagaatggataaaagaaaaagtactccaatttctctcacaacatga 6497357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 22484798 - 22484714
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccc-ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaattt 302  Q
    |||| |||||||||||||||| |||| ||||||||||||||| |||||||| |||||||| ||||||||| |||||||| |||||    
T  22484798 atgcacataaaccaaatcttctaccccttttggatccattttgtttcttttaaaagaatggataaaagagaaagtactcaaattt 22484714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 6124709 - 6124623
Alignment:
Q  228 aaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||||||| ||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  6124709 aaccaaattttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 6124623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 219 - 308
Target Start/End: Original strand, 40308425 - 40308515
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctca 308  Q
    |||| |||||||||||||||  |||||||| ||||||||||| |||||||| |||||||| ||| ||||| |||||||| ||||| |||||    
T  40308425 atgcacataaaccaaatcttataccctttttggatccattttgtttcttttcaaagaatggatagaagagaaagtactcaaatttctctca 40308515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 40308279 - 40308348
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  40308279 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 40308348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 628 - 690
Target Start/End: Complemental strand, 29825873 - 29825808
Alignment:
Q  628 tttacatgtgctaaaaacaatcattaata---caaacaatcttattaagaagaaagtaaacatttt 690  Q
    ||||||| |||| || |||||||||||||   ||||||||||||||||||||||||||||||||||    
T  29825873 tttacatatgctgaagacaatcattaataatacaaacaatcttattaagaagaaagtaaacatttt 29825808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 226
Target Start/End: Original strand, 4169922 - 4170032
Alignment:
Q  116 tctcctctcctccgtttccataatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgg 215  Q
    ||||||||||||| ||||||| |||||   |||    ||| ||||| || |||||||| ||||| ||||| ||||| |||||||||||| ||||||||||    
T  4169922 tctcctctcctccatttccatcatcaagatacaaatcagcttccaaatctggttcatccaaagacaactctgctaactcaattccaacaccatcaagcgg 4170021  T
Q  216 gtcatgcgcat 226  Q
     ||||||||||    
T  4170022 ttcatgcgcat 4170032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 6497113 - 6497178
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgc 222  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||    
T  6497113 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgc 6497178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 22484944 - 22484881
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcat 220  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||    
T  22484944 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcat 22484881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 32750837 - 32750887
Alignment:
Q  28 actacccaaaaaggacatagtttagctattcataaagaacatcatagtccaac 80  Q
    |||||||||||| ||||  |||||||||| |||||||||||||||||||||||    
T  32750837 actacccaaaaaagaca--gtttagctatccataaagaacatcatagtccaac 32750887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 6124842 - 6124787
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaag 212  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||    
T  6124842 tccaaatccggttcatccaaagacaactctgctaactcaattccaacatcatcaag 6124787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 8357411 - 8357314
Alignment:
Q  219 atgcgcataaaccaaatcttcaacccttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||| |||||||||||||||| ||||||||||||| |||||||||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  8357411 atgcacataaaccaaatcttctacccttttggatctattttatttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 8357314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 1036403 - 1036498
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  1036403 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 1036498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 7188367 - 7188462
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  7188367 atgcacataaaccaaatcttctaccctttttggatccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacaaca 7188462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 1036257 - 1036326
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  1036257 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 1036326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 7188221 - 7188290
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  7188221 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 7188290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 8357557 - 8357488
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| || |||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  8357557 tccaaatcaggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 8357488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 22989068 - 22989137
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||  ||||||||||    
T  22989068 tccaaatccggttcatccaaagacaactctgctaactcaattccaacatcatcaagcgattcatgcgcat 22989137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 23799328 - 23799259
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||  ||||||||||    
T  23799328 tccaaatccggttcatccaaagacaactctgctaactcaattccaacatcatcaagcgattcatgcgcat 23799259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 219 - 321
Target Start/End: Complemental strand, 25257137 - 25257034
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatgat 317  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||| ||||||| |||||| ||||| |||||||     
T  25257137 atgcacataaaccaaatcttctaccctttttggatccattttatttcttttcaaagaatggataaaagagaaagtactgcaatttctctcacaacatgag 25257038  T
Q  318 gaat 321  Q
    ||||    
T  25257037 gaat 25257034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 8132701 - 8132606
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  8132701 atgcacataaaccaaatcttctaccctttttggatccattttatttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 8132606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 224 - 316
Target Start/End: Complemental strand, 30324235 - 30324142
Alignment:
Q  224 cataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||||||||||| ||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||||||||| ||||| |||||||    
T  30324235 cataaaccaaatattctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactccaatttctctcacaacatga 30324142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 6916451 - 6916546
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  6916451 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 6916546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 38330968 - 38330873
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  38330968 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 38330873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 52895290 - 52895385
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  52895290 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 52895385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 28658895 - 28658990
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| | |||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  28658895 atgcacataaaccaaatcttctatcctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactctaatttctctcacaaca 28658990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 1043693 - 1043595
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccc-ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||| |||||||||||||||| |||| ||||||||| ||||| |||||||| |||||||| ||||||||| |||||  | ||||| ||||| |||||||    
T  1043693 atgcacataaaccaaatcttctaccctttttggatctattttgtttcttttcaaagaatggataaaagagaaagtatccaaatttctctcacaacatga 1043595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 3427382 - 3427296
Alignment:
Q  228 aaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||||||| ||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  3427382 aaccaaattttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 3427296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 219 - 308
Target Start/End: Complemental strand, 5984706 - 5984616
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccc-ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctca 308  Q
    |||| |||||||||||||||  |||| |||| |||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| |||||    
T  5984706 atgcacataaaccaaatcttataccctttttagatccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctca 5984616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 6916305 - 6916374
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  6916305 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 6916374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 8132847 - 8132778
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  8132847 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 8132778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 38331114 - 38331045
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  38331114 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 38331045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 52895144 - 52895213
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  52895144 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 52895213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 25257283 - 25257214
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| |||||  |||| |||||||||||| |||||||||| ||||||||||    
T  25257283 tccaaatccggttcatccaaagacaactcttctaactcaattccaacatcatcaagcggttcatgcgcat 25257214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 5984842 - 5984783
Alignment:
Q  167 gttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  5984842 gttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 5984783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 28948650 - 28948719
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| |||| |||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||| ||||    
T  28948650 tccaaatccgattcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgtgcat 28948719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 30324385 - 30324317
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||| ||||| |||||||||| ||||||||||    
T  30324385 tccaaatccggttcatccaaagacaactctgctaactcaatt-caacatcatcaagcggttcatgcgcat 30324317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 3427515 - 3427460
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaag 212  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||    
T  3427515 tccaaatccggttcatccaaagacaactctgctaactcaattccaacatcatcaag 3427460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 1043815 - 1043770
Alignment:
Q  181 aactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  1043815 aactctgctaactcaattccaacaccatcaagcggttcatgcgcat 1043770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 219 - 320
Target Start/End: Original strand, 25207 - 25309
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatgat 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| ||||||||    
T  25207 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcaaaacatgat 25306  T
Q  318 gaa 320  Q
    |||    
T  25307 gaa 25309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 25069 - 25129
Alignment:
Q  166 ggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    |||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  25069 ggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 25129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 27373 - 27471
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||||||||| ||||| |||||||    
T  27373 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactccaatttctctcacaacatga 27471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 27236 - 27296
Alignment:
Q  166 ggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    |||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  27236 ggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 27296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 219 - 314
Target Start/End: Original strand, 41671 - 41767
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacat 314  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||||||||| ||||| |||||    
T  41671 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactccaatttctctcataacat 41767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 41533 - 41594
Alignment:
Q  165 cggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||||||| ||||| ||||| ||||| |||||||||||| ||||||| || ||||||||||    
T  41533 cggttcatccaaagacaactctgctaactcaattccaacaccatcaagaggttcatgcgcat 41594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 7744 - 7842
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  7744 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 7842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 7604 - 7667
Alignment:
Q  163 tccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||||||||  ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  7604 tccggttcattcaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 32707488 - 32707586
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  32707488 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 32707586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 224 - 316
Target Start/End: Original strand, 1639381 - 1639474
Alignment:
Q  224 cataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| |||||| || |||||||||||||| ||||| |||||||    
T  1639381 cataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaatagaaagtactccaatttctctcacaacatga 1639474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 9792827 - 9792732
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  9792827 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 9792732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 12852641 - 12852546
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  12852641 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 12852546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 30918883 - 30918788
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  30918883 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 30918788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 26794580 - 26794664
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaattt 302  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||| |||| ||| |||||    
T  26794580 atgcacataaaccaaatcttctaccctttttggatccattttatttcttttcaaagaatggataaaagagaaagtgctcaaattt 26794664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 33830292 - 33830197
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| ||||||||||| |||  |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  33830292 atgcacataaaccaaagcttttaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 33830197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 9792973 - 9792904
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  9792973 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 9792904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 26794434 - 26794503
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| || |||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  26794434 tccaaatctggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 26794503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 1639236 - 1639299
Alignment:
Q  163 tccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||| | ||||||||||    
T  1639236 tccggttcatccaaagacaactctgctaactcaattccaacaccatcaagctgttcatgcgcat 1639299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 12852787 - 12852718
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||| ||||||| ||||| ||||  ||||| |||||||||||| |||||||||| ||||||||||    
T  12852787 tccaaatccagttcatccaaagacaactatgctaactcaattccaacaccatcaagcggatcatgcgcat 12852718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 39690172 - 39690241
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| |||| |||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||| ||||    
T  39690172 tccaaatccgattcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgtgcat 39690241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 32707348 - 32707411
Alignment:
Q  163 tccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||||||||  ||||| ||||  ||||| |||||||||||| |||||||||| ||||||||||    
T  32707348 tccggttcattcaaagacaactatgctaactcaattccaacaccatcaagcggttcatgcgcat 32707411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 33830432 - 33830373
Alignment:
Q  163 tccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgc 222  Q
    ||||||||||| ||||| | ||| ||||| |||||||||||| |||||||||| ||||||    
T  33830432 tccggttcatccaaagacagctctgctaactcaattccaacaccatcaagcggttcatgc 33830373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 30024 - 30119
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  30024 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 30119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 4246458 - 4246363
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  4246458 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 4246363  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 28876154 - 28876249
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  28876154 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 28876249  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 34900958 - 34901053
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  34900958 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 34901053  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 2872574 - 2872672
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccc-ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||| |||||||||||||||| |||| |||| |||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  2872574 atgcacataaaccaaatcttctaccctttttcgatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 2872672  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 12580132 - 12580222
Alignment:
Q  227 aaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    ||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  12580132 aaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtacaccaatttctctcacaacatga 12580222  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 36483954 - 36483856
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||| |||||||||||||||| |||||||| ||||||||||| ||| |||| |||||||| ||||||||  |||||||||||||| ||||| |||||||    
T  36483954 atgcacataaaccaaatcttctaccctttttggatccattttgtttattttcaaagaatggataaaagaaaaagtactccaatttctctcacaacatga 36483856  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 37669099 - 37669001
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 316  Q
    |||| |||||||||||||||| ||| |||| ||||||||||| |||||||| |||||||| ||||||||  |||||||||||||| ||||| |||||||    
T  37669099 atgcacataaaccaaatcttctaccttttttggatccattttgtttcttttcaaagaatggataaaagaaaaagtactccaatttctctcacaacatga 37669001  T

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Target: chr8; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 5539951 - 5539856
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||  ||||||||| |||||||| ||||| ||||| ||||    
T  5539951 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatagataaaagagaaagtactcaaatttatctcacaaca 5539856  T

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Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 45216809 - 45216904
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccc-ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||||||| |||| ||||| ||||||||| ||||||||  ||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  45216809 atgcacataaaccaaatcttctaccctttttgaatccattttgtttctttttcaagaatggataaaagagaaagtactcaaatttctctcacaaca 45216904  T

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Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 43771290 - 43771376
Alignment:
Q  228 aaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||||||| ||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  43771290 aaccaaattttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 43771376  T

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Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 4246604 - 4246535
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  4246604 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 4246535  T

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Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 5540097 - 5540028
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  5540097 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 5540028  T

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Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 34900812 - 34900881
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  34900812 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 34900881  T

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Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 45216663 - 45216732
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| |||| |||||    
T  45216663 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatacgcat 45216732  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 2872440 - 2872494
Alignment:
Q  169 tcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcg 223  Q
    ||||||||||| ||||| ||||| |||||||||||| |||||||||| |||||||    
T  2872440 tcatctaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcg 2872494  T

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Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 37669245 - 37669187
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgg 215  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| ||||||||||    
T  37669245 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcgg 37669187  T

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Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 12579978 - 12580047
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| | ||| ||| | |||||||||||| |||||||||| ||||||||||    
T  12579978 tccaaatccggttcatccaaagacagctctgctgactcaattccaacaccatcaagcggttcatgcgcat 12580047  T

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Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 36484100 - 36484035
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgc 222  Q
    ||||| ||||||||||| ||||| ||||| || || |||||||||||| |||||||||| ||||||    
T  36484100 tccaaatccggttcatccaaagacaactctgccaactcaattccaacaccatcaagcggttcatgc 36484035  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 43771157 - 43771212
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaag 212  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||    
T  43771157 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaag 43771212  T

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Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 28876019 - 28876077
Alignment:
Q  168 ttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    |||||||||||| ||||| ||||| |||||||||||| ||||||  || ||||||||||    
T  28876019 ttcatctaaagacaactctgctaactcaattccaacaccatcaaatggttcatgcgcat 28876077  T

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Target: scaffold0005 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 44193 - 44288
Alignment:
Q  219 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 313  Q
    |||| |||||||||||| ||| |||||||| ||||||||||| |||||||| ||||| || ||||||||| |||||||| ||||| ||||| ||||    
T  44193 atgcacataaaccaaattttctaccctttttggatccattttgtttctttttaaagactggataaaagagaaagtactcaaatttctctcacaaca 44288  T

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Target: scaffold0005; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 44047 - 44116
Alignment:
Q  157 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||| | |||||||||| ||||||||||    
T  44047 tccaaatccggttcatccaaagacaactctgctaactcaattccaatatcatcaagcggttcatgcgcat 44116  T

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