View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_high_22 (Length: 424)
Name: NF2700_high_22
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 408
Target Start/End: Original strand, 24832188 - 24832592
Alignment:
| Q |
13 |
aaaataaaatgcaacaagaacttcatattaataataataaaatttatccacatggaaggattttaaaaaataatccaaaatccaatttaatcagaactgt |
112 |
Q |
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| T |
24832188 |
aaaataaaatgcaacaagaacttcatattaataataa---aatttatccacatggaaggattttaaaaaataatccaaaatccaatttaatcagaactgt |
24832284 |
T |
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| Q |
113 |
tttgacaaaagagtcttgctaacattta------------cttgaatcaatttaaatagtaaatttttatgannnnnnngatccagttatatctaataaa |
200 |
Q |
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| T |
24832285 |
tttgacaaaagagtcttgctaacaaatatatcatgacactctttaaagattttaaatagtaaatttttatgattattttgatccagttatatctaataaa |
24832384 |
T |
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| Q |
201 |
attcaatttgttgtgcaatatttacttgaatcggtttgattgtgaaaaccatatttattatcaattgagttattgtcacctaaacttggcctacatgcta |
300 |
Q |
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| T |
24832385 |
attcaatttgttgtgcaatatttacttgaatcggtttgattgtgaaaaccatatttattatcaattgagttattgtcacctaaacttggcctacatgcta |
24832484 |
T |
|
| Q |
301 |
cggaagatagcagcgtctcatcaaacactttcatccaacaagacaaaatggataagatttccaagatattttagatcaaaaaagtccctcaagagatatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24832485 |
cggaagatagcagcgtctcatcaaacactttcatccaacaagacaaaatggataagatttccaagatattttagatcaaaaaagtccctcaagagatatt |
24832584 |
T |
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| Q |
401 |
ttcatgtt |
408 |
Q |
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| T |
24832585 |
ttcatgtt |
24832592 |
T |
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