View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_high_23 (Length: 421)
Name: NF2700_high_23
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 13 - 403
Target Start/End: Original strand, 43997762 - 43998153
Alignment:
| Q |
13 |
atacttaatcatttaaaagtttatgcagatattttacaaagccatactatgcatgatgccatactgaaatatgattgattatgtgtataaaattatttta |
112 |
Q |
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| T |
43997762 |
atacttaatcatttaaaagtatatgcagatattttagaaagccatactatgcatgatgccatactgaaatatgattgattatgtgtataagattatttta |
43997861 |
T |
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| Q |
113 |
aagtgtgattgcaaataacgatgaaattgattcatttagaaggatcccatgcagaatagctttgaagttggaacataatggtaatcttactgaatttcaa |
212 |
Q |
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| T |
43997862 |
aagtgtgattgcaaataacgatgaaattgattcatttagaaggatcccatgcagaatagctttgaagttggaacataatggtaatcttactgaatttcaa |
43997961 |
T |
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| Q |
213 |
c-aacaaaaaacaagcaagtgggattccaatttgactcacttgaacttcaagatggtctgaactgggccaaatatttcatctttagctatcaacatatca |
311 |
Q |
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| T |
43997962 |
caaaaaaaaaacaagcaagtgggattccaatttcactcacttgaacttcaagatggtctgaactgggccaaatatttcatctttagctatcaacatatca |
43998061 |
T |
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| Q |
312 |
tcctatgtaatagccattaacatgtgttagaaaatggtccacaatacacggtcttacggtgcatttctgtaaacagtcacttgtggcaaata |
403 |
Q |
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| T |
43998062 |
tcctatgtaatagccattaacatgtgttagaaaatggtccacaatacacggtcttacggtgcatttctgtaaacagtcacttgtggcaaata |
43998153 |
T |
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