View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_high_25 (Length: 415)
Name: NF2700_high_25
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 14 - 399
Target Start/End: Original strand, 27371950 - 27372342
Alignment:
| Q |
14 |
caaagggaaacaaagccattacaaaattttatttgaagtatggacgtgaaattaaagggtagttgggtctactatgtaaatttgtaaaggtgt---ggtg |
110 |
Q |
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| T |
27371950 |
caaagggatacagagccattacaaaattttgtttgaagtatggacgtgaaattaaagggtaggtgggtgtactaggtaaatttgtaaaggtgatgaggtg |
27372049 |
T |
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| Q |
111 |
ttagagtacttttgagttgaatgaccataaacttttactactattcctaatttgatgttgtt-------gatttcttcaaatttcaaaataaaataacat |
203 |
Q |
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| T |
27372050 |
ttaga---cttttgagttgactgaccataaacttttactactattcctaatttggtgttgttgaatgttgatttcttcaaatttcaaaataaaataacat |
27372146 |
T |
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| Q |
204 |
tatattgttgacttcaaagttcaaacgttagaattaatggagatgcgacgttacaatcatattcatatactatgtatataaatgtgaggttttacgtatt |
303 |
Q |
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| T |
27372147 |
gatattgttgacttcaaagttcaaacgttagaattaatggagatgcgacgttacaatcatattcatatactgtgtatataaacgtgaggttttacgtatt |
27372246 |
T |
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| Q |
304 |
cctttactttgactttgatttggttgattttgagctataaacaacacatacagtatatgtcagatacgaatagaagaaaaatgcttgataaggtat |
399 |
Q |
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| T |
27372247 |
cctttactttgactttgatttggttgattttgagctataaacaacacatacagtatatgtcagatacgaatagaagaaaaatgcttgataaggtat |
27372342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 3587102 - 3587070
Alignment:
| Q |
306 |
tttactttgactttgatttggttgattttgagc |
338 |
Q |
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| T |
3587102 |
tttactttgactttgatttggttgattttgagc |
3587070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 337
Target Start/End: Complemental strand, 31681291 - 31681260
Alignment:
| Q |
306 |
tttactttgactttgatttggttgattttgag |
337 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31681291 |
tttactttgactttgatttggttgattttgag |
31681260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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