View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_high_27 (Length: 385)
Name: NF2700_high_27
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 7885215 - 7884862
Alignment:
| Q |
18 |
atgacctacagggctacaatgcgtaacccctattcgaataattttttagggtgttgcgtgataactcccttggtaatgggatcatgacaccccatgtttt |
117 |
Q |
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| T |
7885215 |
atgacctacaaggctacaatacgtaacccctatttgaataattttttagggtgttgcgtgataactcccttggtagtgggatcataacaccccatgtttt |
7885116 |
T |
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| Q |
118 |
ggcttcaaattcttcactccagcatgatccgttgataagttccttttatgtgcagctccactacaatatgtttattccctcatttctcgaaacaattatt |
217 |
Q |
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| T |
7885115 |
ggcttcaaattcttaactccagcatgatccgttgataagttccttttatgtgcagctccactacaatatgtttcttccctcatttctcgaaacaattatt |
7885016 |
T |
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| Q |
218 |
gacactaagagc-aagatcgtgggtaatgcttcattgtccattcccatcacgcttgtgacttagttttatgcctctgacgacccaccttttggactagtg |
316 |
Q |
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| T |
7885015 |
gacactaagagcaaagatcgcgggtaatgcttcattgtccattcccatcacgcttgtgacttagttttatgtctctgacgacccaccttttggactagtg |
7884916 |
T |
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| Q |
317 |
actttgagaaag--tgagctcactcgctcagctgctctaacattgcccatcttt |
368 |
Q |
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| T |
7884915 |
actttgagaaagaatgagctcactcgctcagctgctctaacattgcccatcttt |
7884862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 11483126 - 11483201
Alignment:
| Q |
41 |
taacccctattcgaataattttttagggtgttgcgtgataactcccttggtaatgggatcatgacaccccatgttt |
116 |
Q |
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| T |
11483126 |
taacccctattcggataattttcacggatgttgcgtgatagctctcttggtagtgggatcgtggcaccccatgttt |
11483201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 2883188 - 2883120
Alignment:
| Q |
35 |
aatgcgtaacccctattcgaataattttttagggtgttgcgtgataactcccttggtaatgggatcatg |
103 |
Q |
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| T |
2883188 |
aatgtgtaacctctattcggctcatttttttgggtgttgcgtgataactctcatggtagtgggatcatg |
2883120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 35413971 - 35413926
Alignment:
| Q |
66 |
gggtgttgcgtgataactcccttggtaatgggatcatgacacccca |
111 |
Q |
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| T |
35413971 |
gggtgttgcgtgatagatcccttgttagtgggatcatgacacccca |
35413926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 39046312 - 39046353
Alignment:
| Q |
58 |
attttttagggtgttgcgtgataactcccttggtaatgggat |
99 |
Q |
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| T |
39046312 |
atttttgaggatgttgcgtgataactcccttggtgatgggat |
39046353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 34456535 - 34456483
Alignment:
| Q |
40 |
gtaacccctattcgaataattttttagggtgttgcgtgataactcccttggta |
92 |
Q |
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| T |
34456535 |
gtaactcctatttggataattttttagggtgttgtgtgataacttctttggta |
34456483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 7665360 - 7665417
Alignment:
| Q |
31 |
ctacaatgcgtaacccctattcgaataattttttagggtgttgcgtgataactccctt |
88 |
Q |
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| T |
7665360 |
ctacaatgtataacccctattcgactaatttttgcgggtgttgggtgataaccccctt |
7665417 |
T |
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