View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_high_37 (Length: 337)
Name: NF2700_high_37
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 5e-81; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 27454458 - 27454618
Alignment:
| Q |
1 |
ttcagcaagaatgccattgaacaaagtactcatagaacattgcttgtctgtgaagtatctattgttcctttcaatccagatactccaaatggtgtgaatt |
100 |
Q |
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| T |
27454458 |
ttcagcaagaatgccattgaacaaagtactcatagaacattgcttgtctgtgaagtatctattgttcctatcaatccagatactccaaatggtgtgaatt |
27454557 |
T |
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| Q |
101 |
atagcatcattggtaacttgtttcacaagtttactgccaagtccattgcttcccataagaa |
161 |
Q |
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| T |
27454558 |
atagcatcattcgtaacttgtttcacaagtttactgccaagtccattgcttcccataagaa |
27454618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 176 - 316
Target Start/End: Original strand, 27214869 - 27215009
Alignment:
| Q |
176 |
gacatttttcttcggtattgtaatcttcacgacaacaatattgatcctgatttaaagccgaacaagcgctcttataagcagccacactcccatcagaacc |
275 |
Q |
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| T |
27214869 |
gacatttttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcgctcttacaagcaaccacactcccatcagtacc |
27214968 |
T |
|
| Q |
276 |
tatcatttagagtttttaaggacacacaacattaatgttcc |
316 |
Q |
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| T |
27214969 |
tatcacttggagctctgaaggacacacaacattgatgttcc |
27215009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 176 - 316
Target Start/End: Original strand, 27432578 - 27432718
Alignment:
| Q |
176 |
gacatttttcttcggtattgtaatcttcacgacaacaatattgatcctgatttaaagccgaacaagcgctcttataagcagccacactcccatcagaacc |
275 |
Q |
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| T |
27432578 |
gacatttttcttcggtattgtaatctccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaacc |
27432677 |
T |
|
| Q |
276 |
tatcatttagagtttttaaggacacacaacattaatgttcc |
316 |
Q |
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| T |
27432678 |
tatcacttggagctctgaagggcacacaacattaatgttcc |
27432718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 176 - 316
Target Start/End: Complemental strand, 27444032 - 27443892
Alignment:
| Q |
176 |
gacatttttcttcggtattgtaatcttcacgacaacaatattgatcctgatttaaagccgaacaagcgctcttataagcagccacactcccatcagaacc |
275 |
Q |
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| T |
27444032 |
gacatttttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcgctcttacaagcaaccacactcccatcagtacc |
27443933 |
T |
|
| Q |
276 |
tatcatttagagtttttaaggacacacaacattaatgttcc |
316 |
Q |
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| T |
27443932 |
tatcacttggagctctgaaggacacacaacattgatgttcc |
27443892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 317
Target Start/End: Original strand, 27207498 - 27207639
Alignment:
| Q |
176 |
gacatttttcttcggtattgtaatcttcacgacaacaatattgatcctgatttaaagccgaacaagcgctcttataagcagccacactcccatcagaacc |
275 |
Q |
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||||||||||||| |||||| ||||| ||||||||||||||| ||| | ||||||||| |||||||||||||| ||||| |||||||||||||||||| |
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| T |
27207498 |
gacatttttcttcagtattgaaatctccacgacaacaatatttatcttcctttaaagccaaacaagcgctcttacaagcaaacacactcccatcagaacc |
27207597 |
T |
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| Q |
276 |
tatcatttagagtttttaaggacacacaacattaatgttcct |
317 |
Q |
| |
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| T |
27207598 |
aatcacctggagctctgaaggacacacaacattaatgttcct |
27207639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 176 - 316
Target Start/End: Original strand, 27220831 - 27220971
Alignment:
| Q |
176 |
gacatttttcttcggtattgtaatcttcacgacaacaatattgatcctgatttaaagccgaacaagcgctcttataagcagccacactcccatcagaacc |
275 |
Q |
| |
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||||||||||||| |||||| ||||| ||||||||||||||| ||| | |||||||||| ||||||| |||||| | ||| |||||||||||||| ||| |
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| T |
27220831 |
gacatttttcttcagtattgaaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaggcaatcacactcccatcagtacc |
27220930 |
T |
|
| Q |
276 |
tatcatttagagtttttaaggacacacaacattaatgttcc |
316 |
Q |
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|| | || ||| | | |||| ||||||||||||||||||| |
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| T |
27220931 |
aataacttggagctctgaagggcacacaacattaatgttcc |
27220971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 315
Target Start/End: Original strand, 20952530 - 20952617
Alignment:
| Q |
228 |
taaagccgaacaagcgctcttataagcagccacactcccatcagaacctatcatttagagtttttaaggacacacaacattaatgttc |
315 |
Q |
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| T |
20952530 |
taaagccaaacaagcgcttttacaagccaccacactcccatcagaaccggtcacttggagctcttaaggacacacaatattaatgttc |
20952617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 276
Target Start/End: Original strand, 27409757 - 27409848
Alignment:
| Q |
185 |
cttcggtattgtaatcttcacgacaacaatattgatcctgatttaaagccgaacaagcgctcttataagcagccacactcccatcagaacct |
276 |
Q |
| |
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|||||||||||||| | ||||||||||||||||||| ||| |||||| | ||||| |||||| ||||| | |||||||||||||||||| |
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| T |
27409757 |
cttcggtattgtaacttccacgacaacaatattgatctgtattaaaagccaagcaagcactcttacaagcaacgacactcccatcagaacct |
27409848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 27388819 - 27388892
Alignment:
| Q |
203 |
cacgacaacaatattgatcctgatttaaagccgaacaagcgctcttataagcagccacactcccatcagaacct |
276 |
Q |
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| T |
27388819 |
cacgacaacaatattgatcggtattaaaagccaaacaagcactcttacaagcaacgacacttccatcagaacct |
27388892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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