View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_high_43 (Length: 325)
Name: NF2700_high_43
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 33 - 311
Target Start/End: Complemental strand, 42725201 - 42724938
Alignment:
| Q |
33 |
agtgagttgaaccatgactctgacaccgctatttgttcttgaggaggaacttaaagtggtcgttgttttgggtcttgagtaacgtttaagatgacttgga |
132 |
Q |
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| T |
42725201 |
agtgagttgaaccatgactctgacaccgctatttgttcttgtggaggaacttaaag---------------gccttgagtaacgataaagatgatttgga |
42725117 |
T |
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| Q |
133 |
caccacatattcatccaaaacctttagacatagatatatggatcatttcatctatattattctcaaaatgtgttttttattcaatgtaagattcttacta |
232 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42725116 |
caccacatattcatccaaaactttgagacatagatatatggatcatttcatctatattattctcaaaatgtgttttttattcaatgtaagattcttacta |
42725017 |
T |
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| Q |
233 |
acacttgacatgccaagaatctctcactcaagtgtgggcttatctattcatcggatatttttccccttcaaactggatt |
311 |
Q |
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||||||||||| |||| ||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||||| |
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| T |
42725016 |
acacttgacattccaacaatctctcactcaagtgtgagcttatctattcattgggtatttatccccttcaaactggatt |
42724938 |
T |
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