View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_high_45 (Length: 309)
Name: NF2700_high_45
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 13537406 - 13537680
Alignment:
| Q |
16 |
atgtgtggtctacaactataagattcacacaatattatagtaaaatgagacttaacaatcaagtgattatatatatccagttacgttagaattgatctct |
115 |
Q |
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| T |
13537406 |
atgtgtggtctacaactataagattcacacaatattatagtaaaat-agacttaacaatcaagtgattaaatatatccagttacattagaattgatctat |
13537504 |
T |
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| Q |
116 |
aacgaaaacaatttttagtcgaactttactttcattttgagggaaccaacttatataaattatgatggttgtattgtaggtggcaaaaccgactatgtgc |
215 |
Q |
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| T |
13537505 |
gacaaaaacaatttttagtcgaactttactttcattttgagggaaccaacttatataaattatgatggttgtattgtaggtggcaaaaccgactatgtgc |
13537604 |
T |
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| Q |
216 |
tacacaaattagaagcagtagatgaagcaaacttgggatacaactatagcattgtaggaggaacagggttggatga |
291 |
Q |
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| T |
13537605 |
tacacaaattagaagcaatggatgaagcaaacttgggatacaactatagcattgtaggaggaacagggttggatga |
13537680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 58 - 291
Target Start/End: Original strand, 13541488 - 13541721
Alignment:
| Q |
58 |
aaatgagacttaacaatcaagtgattatatatatccagttacgttagaattgatctctaacgaaaacaatttttagtcgaactttactttcattttgagg |
157 |
Q |
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| T |
13541488 |
aaatgagattcaacaatcaagtaattaacgatatccagttacgttcagattgatcaatgacttaaacaatttttagtcaaacttta-tttaaatttgagg |
13541586 |
T |
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| Q |
158 |
gaaccaa-cttatataaattatgatggttgtattgtaggtggcaaaaccgactatgtgctacacaaattagaagcagtagatgaagcaaacttgggatac |
256 |
Q |
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| T |
13541587 |
gaacaaaacttatataaattatgatggtttaattgtaggtggtaaaaccgactttgtgctacacaaattagaagcaatggatgaggcaaacttgggatac |
13541686 |
T |
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| Q |
257 |
aactatagcattgtaggaggaacagggttggatga |
291 |
Q |
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| T |
13541687 |
aactatagcatagtaggaggaacaggattggatga |
13541721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 173 - 291
Target Start/End: Original strand, 13554421 - 13554539
Alignment:
| Q |
173 |
aattatgatggttgtattgtaggtggcaaaaccgactatgtgctacacaaattagaagcagtagatgaagcaaacttgggatacaactatagcattgtag |
272 |
Q |
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| T |
13554421 |
aattataatggttgtattgcagatggcaaaaccaactttgtgctacacaaattagatgcagtagatgaggcaaactttggatacaactatagcttagtag |
13554520 |
T |
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| Q |
273 |
gaggaacagggttggatga |
291 |
Q |
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| T |
13554521 |
gaggaacaggattggatga |
13554539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 291
Target Start/End: Original strand, 13530699 - 13530817
Alignment:
| Q |
173 |
aattatgatggttgtattgtaggtggcaaaaccgactatgtgctacacaaattagaagcagtagatgaagcaaacttgggatacaactatagcattgtag |
272 |
Q |
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|||||| |||||| ||||| || |||||||||| ||| |||||||||||||||||| ||||||||||| ||||||| ||||| ||||| ||| | |||| |
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| T |
13530699 |
aattataatggttatattgcagatggcaaaaccaactttgtgctacacaaattagatgcagtagatgaggcaaactatggatataactacagcttagtag |
13530798 |
T |
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| Q |
273 |
gaggaacagggttggatga |
291 |
Q |
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| T |
13530799 |
gaggaacagggttggatga |
13530817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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