View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_high_61 (Length: 282)
Name: NF2700_high_61
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_61 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 4863833 - 4863583
Alignment:
| Q |
19 |
tataaactctgaagaaggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtgatgtt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4863833 |
tataaactctgaagaaggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtgatgtt |
4863734 |
T |
|
| Q |
119 |
acgttgaatggaatcgagatttttaaaataagcgataaaaataataatttctttggactgaatccaaaaccctttatcctatctcccacagaacaaggtt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4863733 |
acgttgaatggaatcgagatttttaaaataagcgataaaaataataatttctttggactgaatccaaaaccctttattctatctcccacagaacaaggtt |
4863634 |
T |
|
| Q |
219 |
taccaactgagcagtcgaagaaatcaaccatagttatcgtcgttgttgttg |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4863633 |
taccaactgagcagtcgaagaaatcaaccatagttatcgtcgttgttgttg |
4863583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 35 - 190
Target Start/End: Original strand, 4784035 - 4784187
Alignment:
| Q |
35 |
ggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtgatgttacgttgaatggaatcg |
134 |
Q |
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||||||||||||||||||| |||||| |||||| ||||| |||||| ||||||||| | ||| ||| ||| |||||||| |||||||||||||| | |
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| T |
4784035 |
ggaagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaacctatgcctacggtatatcgtgatgtcacgttgaatggaattg |
4784134 |
T |
|
| Q |
135 |
agatttttaaaataagcgataaaaataataatttctttggactgaatccaaaaccc |
190 |
Q |
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| T |
4784135 |
agattttgaaaataagtgataaa---aataatctctttggagtgaatccaaaaccc |
4784187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 190
Target Start/End: Original strand, 4816464 - 4816616
Alignment:
| Q |
35 |
ggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtgatgttacgttgaatggaatcg |
134 |
Q |
| |
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||||||||||||||||||| |||||| |||||| ||||| |||| | ||||||||| | ||| | | ||| |||||||| |||||||||||||| | |
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| T |
4816464 |
ggaagctctcaaattgaaaaagttaatctttcgatcaagctacatcgattaccaaaacctatgccttcggtatatcgtgatgtcacgttgaatggaattg |
4816563 |
T |
|
| Q |
135 |
agatttttaaaataagcgataaaaataataatttctttggactgaatccaaaaccc |
190 |
Q |
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| T |
4816564 |
agattttgaaaataagtgataaa---aataatctctttggagtgaatccaaaaccc |
4816616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 4697379 - 4697543
Alignment:
| Q |
24 |
actctgaagaaggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagacc-atgtttacaaaataccgtgatgttacgt |
122 |
Q |
| |
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||||| |||||||||||||||||||||||||| |||| ||||| ||||| |||||| | |||| ||| || || |||| |||| ||||||| || | |
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| T |
4697379 |
actctcaagaaggaagctctcaaattgaaagacttaatctttcaatcaagctacaacgagcaccag-gacgtatcttcacaagatacggtgatgtcacat |
4697477 |
T |
|
| Q |
123 |
tgaatggaatcgagatttttaaaataagcgataaaaataataatttctttggactgaatccaaaac |
188 |
Q |
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||||||| ||||||||||| ||||||| ||||||||| ||||| |||||||| |||||||||| |
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| T |
4697478 |
tgaatggcatcgagattttgaaaataaatgataaaaatgataatctctttggatcaaatccaaaac |
4697543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 4672582 - 4672440
Alignment:
| Q |
24 |
actctgaagaaggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtgatgttacgtt |
123 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||| | ||| | |||| | || |||| | | | |||||| || ||||||| || || |
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| T |
4672582 |
actctcaagaaggaagctctcaaattgaaagagttaatctttctattaagcttcaaccactaacaaatatgaactacacaaaagacagtgatgtcacatt |
4672483 |
T |
|
| Q |
124 |
gaatggaatcgagatttttaaaataagcgataaaaataataat |
166 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||||||||| |
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| T |
4672482 |
aaatggaatcgagattttcaaagtaagtgataaaaataataat |
4672440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 4630833 - 4630791
Alignment:
| Q |
24 |
actctgaagaaggaagctctcaaattgaaagagttaacctttc |
66 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
4630833 |
actctcaagaaggaagctctcaaattgaaagagttaatctttc |
4630791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 4653426 - 4653390
Alignment:
| Q |
24 |
actctgaagaaggaagctctcaaattgaaagagttaa |
60 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
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| T |
4653426 |
actctgaagaaggaagcactcaaattgaaagagttaa |
4653390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 163
Target Start/End: Original strand, 4712275 - 4712403
Alignment:
| Q |
35 |
ggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtgatgttacgttgaatggaatcg |
134 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | ||| | |||| | |||| | | || | ||||| ||||||||||| | |||||||||| | |
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| T |
4712275 |
ggaagctctgaaattgaaagagttaacctttcaattaagcttcaacgagaaccagaaagtatctacacaaattaccgtgatgtcataatgaatggaattg |
4712374 |
T |
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| Q |
135 |
agatttttaaaataagcgataaaaataat |
163 |
Q |
| |
|
||||||| |||||||| |||||||||||| |
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| T |
4712375 |
agattttcaaaataagtgataaaaataat |
4712403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 4636753 - 4636631
Alignment:
| Q |
40 |
ctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtgatgttacgttgaatggaatcgagatt |
139 |
Q |
| |
|
||||||||||||||||||| | ||||| ||||| | |||| ||||||| | ||||| |||| ||| |||||||||| | ||||||||||||||| |
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| T |
4636753 |
ctctcaaattgaaagagtttatctttcaatcaagcttcaacgattaccacaacccatgcctacagtatatcgtgatgttattcttaatggaatcgagatt |
4636654 |
T |
|
| Q |
140 |
tttaaaataagcgataaaaataa |
162 |
Q |
| |
|
|| ||||| || |||||| |||| |
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|
| T |
4636653 |
ttcaaaattagtgataaatataa |
4636631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 4643494 - 4643454
Alignment:
| Q |
122 |
ttgaatggaatcgagatttttaaaataagcgataaaaataa |
162 |
Q |
| |
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|||||||||||||||||||| |||||||| || |||||||| |
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|
| T |
4643494 |
ttgaatggaatcgagattttaaaaataagtgacaaaaataa |
4643454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 18926009 - 18926069
Alignment:
| Q |
102 |
caaaataccgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataa |
162 |
Q |
| |
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||||||||||| |||| || |||||||| ||||||||||| |||||||| || |||||||| |
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|
| T |
18926009 |
caaaataccgtaatgtcacattgaatgggatcgagattttgaaaataagtgacaaaaataa |
18926069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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