View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2700_high_63 (Length: 271)
Name: NF2700_high_63
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_63 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 780313 - 780555
Alignment:
| Q |
20 |
gccaaatggaacaaaatcaggatttgtcatctgtgagataaagaagaatcatctaaaagttggactcaaagggcagccaccaattattgatgtaagcttt |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
780313 |
gccaaatggaacaaaatcagggtttgtcatctgtgagataaagaagaatcatctaaaagttggactcaaagggcagccaccaattattgatgtaagcttt |
780412 |
T |
|
| Q |
120 |
tactcagttatatattcggagttactatcaaaagataaatcttacctgcgacatatatttgtgttatttttctaaattgatcgttccttttatctttcaa |
219 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
780413 |
tactcagttatatattcgcagttactatcaaaagataaatcttacctgcgacatatatttgtgttattttt-gaaattgatcgttccttttatctttcaa |
780511 |
T |
|
| Q |
220 |
tctgtaatttttagtttgtttgaagtttttgtgatgtctgtgct |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
780512 |
tctgtaatttttagtttgtttgaagtttttgtgatgtctgtgct |
780555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 771032 - 770921
Alignment:
| Q |
20 |
gccaaatggaacaaaatcaggatttgtcatctgtgagataaagaagaatcatctaaaagttggactcaaagggcagccaccaattattgatgtaagcttt |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
771032 |
gccaaatggaacaaaatcagggtttgtcatctgtgagattaagaagaaccatctaaaagttggactcaaagggcagccaccaattattgatgtaagcatt |
770933 |
T |
|
| Q |
120 |
tactcagttata |
131 |
Q |
| |
|
|||||||||||| |
|
|
| T |
770932 |
tactcagttata |
770921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 785008 - 785110
Alignment:
| Q |
20 |
gccaaatggaacaaaatcaggatttgtcatctgtgagataaagaagaatcatctaaaagttggactcaaagggcagccaccaattattgatgtaagcttt |
119 |
Q |
| |
|
|||||| |||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
785008 |
gccaaacggaacaaaatcaaggtttgtcacatgtgagataaagaagaaccatctaaaagttggaatcaaagggcagccaccaattattgatgtaagcttt |
785107 |
T |
|
| Q |
120 |
tac |
122 |
Q |
| |
|
||| |
|
|
| T |
785108 |
tac |
785110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University