View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_high_71 (Length: 249)
Name: NF2700_high_71
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_71 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 10609687 - 10609473
Alignment:
| Q |
13 |
aatatgatatgataaaataatattatcatagttgttttgttgtgcgcatcaacacatgataagataacggtttatcctacctatatcatatcttaattta |
112 |
Q |
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| T |
10609687 |
aatatgatatgataaaataatattagtatggttgttttgttgtgcgcatcaacacatgataagataacggtttatcctacctatatcatatcttaattta |
10609588 |
T |
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| Q |
113 |
tcatgctttgtattttagcatgtctctataagacattgagcaatcttttgtcatatacaa--------gaataattgacaacacaagtaagataaagtaa |
204 |
Q |
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| T |
10609587 |
tcatgctttgtattttagcatgtctctataagacattgagcaatcttttgtcatatgcaatgtttggtgaataattgacaacacaagtaagataaagtaa |
10609488 |
T |
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| Q |
205 |
aatttactatcaaac |
219 |
Q |
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| T |
10609487 |
aatttactatcaaac |
10609473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 14518567 - 14518632
Alignment:
| Q |
14 |
atatgatatgataaaataatattatcatagttgttttgttgtgcgcatc-aacacatgataagata |
78 |
Q |
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|||||||||||||||||||||||||||| || || | ||||||||||| ||||||||||| |||| |
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| T |
14518567 |
atatgatatgataaaataatattatcatctttcttatcttgtgcgcatcaaacacatgatatgata |
14518632 |
T |
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