View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_high_79 (Length: 235)
Name: NF2700_high_79
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_79 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31873016 - 31873238
Alignment:
| Q |
1 |
ctaatgagactgcgcagaagcaactgcgattaggaagagagagtgaagcttgtttcggcttttatagtaaaatgtaaaaccctaattataaatgggtcgg |
100 |
Q |
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| T |
31873016 |
ctaatgagactgcgcagaagcaactgcgattaggaagagagagtgaagcttgtttcggcttttatagtaaaatgtaaaaccctaattataaatgggtcgg |
31873115 |
T |
|
| Q |
101 |
gctttacttataagcccatggactatcaaatctacaaagaagaaaaatcatgttactattgacactctct-aagagagnnnnnnnngttcaaataagttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
31873116 |
gctttacttataagcccatggactatcaaatctacaaagaagaaaaatcatgttactattgacactctctaaagagagttttttttgttcaaataagttt |
31873215 |
T |
|
| Q |
200 |
ttactagttttcatgtttaatct |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
31873216 |
ttactagttttcatgtttaatct |
31873238 |
T |
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