View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_high_80 (Length: 233)
Name: NF2700_high_80
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_80 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36377826 - 36377605
Alignment:
| Q |
1 |
cgcatggtttgtgcttcaaaaaatatgcgcaacaattgagaccataactaataaattattaaaagcacattggatttcctacaatgatattgtacttaag |
100 |
Q |
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| T |
36377826 |
cgcatggtttgtgcttcaaaaaatatgcgcaacaattgagaccataactaataaattattaaaagcacattggatttcctacaatgatattgtacttaag |
36377727 |
T |
|
| Q |
101 |
gtcaatatacaccacagttgcaacgcaatcatcgtaacaaaaatgtgagccaacagttgtcatttctgatggaccagcgaccaaggaggttgggtttctc |
200 |
Q |
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| T |
36377726 |
gtcaatatacaccacagttgcaacgcaatcatcgtaacagaaatgtgagccaacagttgtcatttctgatggaccagcgaccaaggaggttgggtttctc |
36377627 |
T |
|
| Q |
201 |
tcagagccacattgatatatgt |
222 |
Q |
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|||||||||||| ||||||||| |
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| T |
36377626 |
tcagagccacatcgatatatgt |
36377605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 36401550 - 36401345
Alignment:
| Q |
4 |
atggtttgtgcttcaaaaaatatgcgc-aacaattgagaccataactaataaattattaaaagcacattggatttcctacaatgatattgtacttaaggt |
102 |
Q |
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| T |
36401550 |
atggtttgcgcttcaaaaagtctgccccaacaaatgagaccgtaactaataaactattcaaatcacaatggatttcctccaatgatattgtacttaaggt |
36401451 |
T |
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| Q |
103 |
caatatacaccacagttgcaacgcaatcatcgtaacaaaaatgtgagccaacagttgtcatttctgatggaccagcgaccaaggaggttgggtttctctc |
202 |
Q |
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| T |
36401450 |
caata--cgccgcaattgccagacaatcctcgtaacagaaaagtgagccagaggttgtcatttccaatataccagccaccaaggaggttgagtttctctc |
36401353 |
T |
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| Q |
203 |
agagccac |
210 |
Q |
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|||||||| |
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| T |
36401352 |
agagccac |
36401345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 36394946 - 36394829
Alignment:
| Q |
30 |
caacaattgagaccataactaataaattattaaaagcacattggatttcctacaatgatattgtacttaaggtcaatatacaccacagttgcaacgcaat |
129 |
Q |
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||||||||||||| ||||| |||| | |||||||| ||||||||||||| | ||||||||||||||| ||||||| |||||| |||||||||| || | |
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| T |
36394946 |
caacaattgagacgataacaaatacaatattaaaatcacattggatttcgtccaatgatattgtactcaaggtca--atacactgcagttgcaacacatt |
36394849 |
T |
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| Q |
130 |
catcgtaacaaaaatgtgag |
149 |
Q |
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|||||||||| ||||||||| |
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| T |
36394848 |
catcgtaacagaaatgtgag |
36394829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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