View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2700_high_82 (Length: 227)
Name: NF2700_high_82
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_high_82 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 46289064 - 46289280
Alignment:
| Q |
11 |
ctctagttgattaaatgttttaaaaaatcttgcattatcatcaaatgtatagcaatcaaatccagtttaattaaatagcgcacaaagattttaatttatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46289064 |
ctctagttgattaaatgttttaaaaaatcttgcattatcatcaaatgtatagcaatcaaatccagtttaattaaatagcgcacaaagattttaatttatt |
46289163 |
T |
|
| Q |
111 |
aggagaggtggtggtaatctagaggatacaaagttattgtgtaaaatgagtatgttgatttgtactccctgatagtaaacaaaaattaaattaaattcat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46289164 |
aggagaggtggtggtaatctagaggatacgaagttattgtgtaaaatgagtatgttgatttgtactccctgatagtaaacaaaaattaaattaaattcat |
46289263 |
T |
|
| Q |
211 |
tcaattctaatttctat |
227 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
46289264 |
tcaattctaatttctat |
46289280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University