View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700_low_1 (Length: 862)

Name: NF2700_low_1
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700_low_1
NF2700_low_1
[»] chr4 (5 HSPs)
chr4 (518-843)||(166901-167225)
chr4 (689-817)||(106800-106928)
chr4 (202-325)||(167262-167384)
chr4 (335-514)||(2306647-2306827)
chr4 (3-86)||(167481-167564)
[»] scaffold0013 (1 HSPs)
scaffold0013 (693-817)||(88553-88677)
[»] chr8 (12 HSPs)
chr8 (333-517)||(21538084-21538269)
chr8 (710-822)||(5656649-5656761)
chr8 (713-807)||(5718267-5718361)
chr8 (713-807)||(5686120-5686214)
chr8 (704-807)||(5638186-5638289)
chr8 (704-807)||(5651384-5651487)
chr8 (704-806)||(5602654-5602756)
chr8 (704-806)||(5602916-5603018)
chr8 (704-806)||(5632352-5632454)
chr8 (704-784)||(5602090-5602170)
chr8 (704-784)||(5638450-5638530)
chr8 (333-382)||(37633313-37633362)
[»] chr7 (2 HSPs)
chr7 (333-508)||(13332658-13332834)
chr7 (689-816)||(13055224-13055351)
[»] chr3 (1 HSPs)
chr3 (727-808)||(12134943-12135024)
[»] chr1 (2 HSPs)
chr1 (333-519)||(35840678-35840875)
chr1 (439-519)||(41570406-41570487)
[»] chr6 (1 HSPs)
chr6 (333-412)||(4087928-4088006)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 518 - 843
Target Start/End: Complemental strand, 167225 - 166901
Alignment:
518 atgtatatatcccaacgccaaaattggccaacttatttcnnnnnnnnnncttccggttatttgaactcattccttttggaaatgaaaacgtgcaagaaca 617  Q
    |||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||    
167225 atgtatatatcccaacgccaaaattggccaacttatttctttcttttttcttccggttatttgaactcattccttttggaaatgaaaacgtgcaagaaca 167126  T
618 catccagcataagaaaaattaacttatcaacttgattggttttatttgcctgattctttaaagggtagtcacagtggaaggcaatggaacctgtctacga 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
167125 catccagcataagaaaaattaacttatcaacttgattggttttatttgcctgatt-tttaaagtgtagtcacagtggaaggcaatggaacctgtctacga 167027  T
718 tactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttcctgcaataaataaa 817  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
167026 tactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgagatatcctgcaataaataaa 166927  T
818 taagaggcaaaggttttatgttgatg 843  Q
    ||||||||||||||||||||||||||    
166926 taagaggcaaaggttttatgttgatg 166901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 689 - 817
Target Start/End: Complemental strand, 106928 - 106800
Alignment:
689 cagtggaaggcaatggaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaa 788  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
106928 cagtggaaggcaatggaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaatttttcatgaa 106829  T
789 tgctcctgtgatttcctgcaataaataaa 817  Q
    | ||||||||||||||||| |||||||||    
106828 tactcctgtgatttcctgccataaataaa 106800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 202 - 325
Target Start/End: Complemental strand, 167384 - 167262
Alignment:
202 cattgtcttagtgaacataacttgattggtagagacattacaaataatttgtatgtgcaatctcgaattcattctccacttattaatctcagtgtggtga 301  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| |||||    
167384 cattgtcctagtgaacataactcgattgatagagacattacaaataatttgtatgtgcaatctcgaattcattctccacttattaacct-tgtgcggtga 167286  T
302 atatttagtcattaatcacttgat 325  Q
    ||||||||||||||||||||||||    
167285 atatttagtcattaatcacttgat 167262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 335 - 514
Target Start/End: Original strand, 2306647 - 2306827
Alignment:
335 gaaatgccatttcccacgaaactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctacnnnnnnnnnnnnnnnnnnn 434  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||| ||||| || |||||||||||||||||||| ||                       
2306647 gaaatgccatttcccacgaaactgaatccacggaaaatacgaattacactatacgatagcgtgtattccaccaaatgcaacttcttttgttttttatttt 2306746  T
435 natattaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattg 514  Q
     ||||||||||||||||||||||||||| ||||||| |||||||| |||| ||||| |||||||||||| |||||||||||    
2306747 tatattaaaataatgtttgtgaaaatcactttagtagaattcgtgattttcgtttactttcattcgtggataatagcattg 2306827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 167564 - 167481
Alignment:
3 gcatagggtggaaaaagtaatagcataannnnnnnngttatattatgaagaatattatccattcagtgacgcataaaatgtcat 86  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||   |||||||||||||    
167564 gcatagggtggaaaaagtaatagcataattttttttgttatattatgaagaatattatccattcagtggtccataaaatgtcat 167481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 693 - 817
Target Start/End: Original strand, 88553 - 88677
Alignment:
693 ggaaggcaatggaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgct 792  Q
    |||||||||||||||| ||||||||||||| |  |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||    
88553 ggaaggcaatggaacccgtctacgatactcagccagagcccacaatggaaaaatatttctatacattgggtaatgcaacatacaatttttcatgaatact 88652  T
793 cctgtgatttcctgcaataaataaa 817  Q
    ||||||| ||||||| |||||||||    
88653 cctgtgagttcctgcgataaataaa 88677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 333 - 517
Target Start/End: Complemental strand, 21538269 - 21538084
Alignment:
333 gggaaatgccatttcccacgaaactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctacnnnnnnnnnnnnnnnnn 432  Q
    ||||||| |||||||||||||||||||||| |||| |||||||||||||| |||||  |||||||||||||||||||||||||                     
21538269 gggaaataccatttcccacgaaactgaatccacggaaaatacgaattacaatatacgctggcgtgtattccaccaaatgctactttttttgttttttatt 21538170  T
433 nnnatattaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattgctg 517  Q
       ||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
21538169 tttatattaaaataatatttgtgaaaatcactttagtacaattcgtggttttcgtttattttcattcgtggttaatagcattgctg 21538084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 710 - 822
Target Start/End: Original strand, 5656649 - 5656761
Alignment:
710 gtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttcctgcaa 809  Q
    |||||||||| || | ||||||||||| ||| || |||||||||||||| | |||||||| ||| || |||||||||||| |||| |||| ||||||| |    
5656649 gtctacgatattcagctagagcccacattggaaatatatctctatacatagcgtaatgcagcatgcagtttttcatgaatactcccgtgagttcctgcca 5656748  T
810 taaataaataaga 822  Q
     | ||||||||||    
5656749 aacataaataaga 5656761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 713 - 807
Target Start/End: Original strand, 5718267 - 5718361
Alignment:
713 tacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttcctgc 807  Q
    ||||||| || | ||||||||||| |||||| ||||||||| |||||| |||||||| ||| || |||||||||||| || |||||| |||||||    
5718267 tacgatattcagctagagcccacattgggaatatatctctaaacattgcgtaatgcagcatgcagtttttcatgaatactgctgtgagttcctgc 5718361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 713 - 807
Target Start/End: Original strand, 5686120 - 5686214
Alignment:
713 tacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttcctgc 807  Q
    ||||||| || | ||||||||||| |||||| ||||||||| |||| | |||||||| ||| || |||||||||||| || |||||| |||||||    
5686120 tacgatattcagctagagcccacattgggaatatatctctaaacatggcgtaatgcagcatgcagtttttcatgaatactgctgtgagttcctgc 5686214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 704 - 807
Target Start/End: Original strand, 5638186 - 5638289
Alignment:
704 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttc 803  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| ||||| | |||    
5638186 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5638285  T
804 ctgc 807  Q
    ||||    
5638286 ctgc 5638289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 704 - 807
Target Start/End: Original strand, 5651384 - 5651487
Alignment:
704 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttc 803  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| ||||| | |||    
5651384 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5651483  T
804 ctgc 807  Q
    ||||    
5651484 ctgc 5651487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 704 - 806
Target Start/End: Complemental strand, 5602756 - 5602654
Alignment:
704 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttc 803  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| ||||| | |||    
5602756 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5602657  T
804 ctg 806  Q
    |||    
5602656 ctg 5602654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 704 - 806
Target Start/End: Complemental strand, 5603018 - 5602916
Alignment:
704 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttc 803  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| ||||| | |||    
5603018 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5602919  T
804 ctg 806  Q
    |||    
5602918 ctg 5602916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 704 - 806
Target Start/End: Original strand, 5632352 - 5632454
Alignment:
704 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttc 803  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| ||||| | |||    
5632352 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5632451  T
804 ctg 806  Q
    |||    
5632452 ctg 5632454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 704 - 784
Target Start/End: Complemental strand, 5602170 - 5602090
Alignment:
704 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttca 784  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| ||||||    
5602170 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca 5602090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 704 - 784
Target Start/End: Original strand, 5638450 - 5638530
Alignment:
704 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttca 784  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| ||||||    
5638450 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca 5638530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 333 - 382
Target Start/End: Original strand, 37633313 - 37633362
Alignment:
333 gggaaatgccatttcccacgaaactgaatctacgggaaatacgaattaca 382  Q
    |||||||||||| ||| |||||| |||||  |||||||||||||||||||    
37633313 gggaaatgccatatcctacgaaagtgaattcacgggaaatacgaattaca 37633362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 333 - 508
Target Start/End: Complemental strand, 13332834 - 13332658
Alignment:
333 gggaaatgccatttcccacgaaactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctacnnnnnnnnnnnnnnnnn 432  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||||| ||||||||||||||||||||                     
13332834 gggaaatgccatttcccacgaaactgaatccacggaaaatacgaattacactatacgatggcttgtattccaccaaatgctactttttttgttttttatt 13332735  T
433 nnnatattaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaata 508  Q
       ||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||    
13332734 tttatattaaaataatgtttgtgaaaatcactttagtacaatttgtggttttcgtttattttaattcgtggttaata 13332658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 689 - 816
Target Start/End: Complemental strand, 13055351 - 13055224
Alignment:
689 cagtggaaggcaatggaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaa 788  Q
    ||||||||| ||||||||| | |||||||||||| | || ||||||||||||||||||||||||||||||||  |||||||||||||||||||| | |||    
13055351 cagtggaagacaatggaacatatctacgatactcagctaaagcccacaatgggaaaatatctctatacattgtataatgcaacatacaatttttgaagaa 13055252  T
789 tgctcctgtgatttcctgcaataaataa 816  Q
    | ||||||||||| ||| ||||||||||    
13055251 tactcctgtgattccctacaataaataa 13055224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 727 - 808
Target Start/End: Original strand, 12134943 - 12135024
Alignment:
727 agagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttcctgca 808  Q
    |||||||| | ||| ||||||| |||||||||||| |||||||||||||||||||||| || || |||||||||||||||||    
12134943 agagcccatagtggaaaaatatttctatacattggataatgcaacatacaatttttcacgattgatcctgtgatttcctgca 12135024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 333 - 519
Target Start/End: Complemental strand, 35840875 - 35840678
Alignment:
333 gggaaatgcc-atttcccacgaaactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctacnnnnnnnnnnnnnnnn 431  Q
    |||||||||| |||||||||||||||||||| |||| |||||||||||| | ||||| ||||| ||||||||||| ||||||||                    
35840875 gggaaatgcccatttcccacgaaactgaatccacggaaaatacgaattatactatacgatggcatgtattccaccgaatgctacattttattttttttta 35840776  T
432 nnnn-atattaaaataatgtttgtgaaaatca---------tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattgctgat 519  Q
         ||||||||| |||||||||||||||||         ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
35840775 tttttatattaaaaaaatgtttgtgaaaatcactttttcactttagtacaattcatggttttcgtttattttcattcgtggttaatagcattgctgat 35840678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 439 - 519
Target Start/End: Complemental strand, 41570487 - 41570406
Alignment:
439 ttaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattgctgat 519  Q
    |||||||||||||||||||||||| ||||| ||| || || ||||| |||| |||  ||||||||| |||||||||||||||    
41570487 ttaaaataatgtttgtgaaaatcactttagcacagtttgtcgttttcgtttgtttctattcgtggtgaatagcattgctgat 41570406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 333 - 412
Target Start/End: Original strand, 4087928 - 4088006
Alignment:
333 gggaaatgccatttcccacgaaactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgc 412  Q
    |||||||  ||||||| || ||||||| || | |||||||||||||||||  |||| |||||||||||||||||||||||    
4087928 gggaaatatcatttcctactaaactga-tccaagggaaatacgaattacacaatacgatggcgtgtattccaccaaatgc 4088006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University