View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700_low_12 (Length: 561)

Name: NF2700_low_12
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700_low_12
NF2700_low_12
[»] chr2 (3 HSPs)
chr2 (2-366)||(15857346-15857709)
chr2 (365-561)||(15857748-15857943)
chr2 (15-77)||(31781797-31781859)
[»] chr1 (2 HSPs)
chr1 (12-112)||(37864691-37864791)
chr1 (49-105)||(17896614-17896670)
[»] chr3 (1 HSPs)
chr3 (16-116)||(48229214-48229314)
[»] chr5 (1 HSPs)
chr5 (230-312)||(32393149-32393232)
[»] chr8 (1 HSPs)
chr8 (64-116)||(30140038-30140090)


Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 2 - 366
Target Start/End: Original strand, 15857346 - 15857709
Alignment:
Q  2 gagagagacctatttaaaacacgatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcattgaagagattttaaatgttgaatca 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||    
T  15857346 gagagagacctatttaaaacacaatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcattcaaaagattttaaatattgaatca 15857445  T
Q  102 aaatcaagttttatggtatatataaaaattatttgaagtcatttaattgttttcataatgcttgcatagcttatagaataatcttataattatccctatt 201  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  15857446 aaatcaagttttatggtatatataaaaattatttgaacacatttaattgttttcataatgcttgcatagcttatagaataatct--taattatccctatt 15857543  T
Q  202 acaatgaagtctattgagagaagttttttaaattgaaattgttaaaattttatttgatatctacatatcacaagacaaattaaatattattgcatttatt 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15857544 acaatgaagtctattgagagaagttttttaaattgaaattgttaaaattttatttgatatctacatatcacaagacaaattaaatattattgcatttatt 15857643  T
Q  302 tcaattgaaaaagattgatttttcagc-aaaaaatataaaaacaatattcagataatctatgagcc 366  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15857644 tcaattgaaaaagattgatttttcagcaaaaaaatataaaaacaatattcagataatctatgagcc 15857709  T

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Target: chr2; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 365 - 561
Target Start/End: Original strand, 15857748 - 15857943
Alignment:
Q  365 cctatttcatcccattctgaagtctttgcaagaagcatgcctagtcgtcattcatcttccacaattatactatttccttttcttattctagggtttgaaa 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15857748 cctatttcatcccattctgaagtctttgcaagaagcatgcctagtcgtcattcatcttctacaattatactatttccttttcttattctagggtttgaaa 15857847  T
Q  465 aacaagcatgctannnnnnnnnggaggagcatgcgtagttattcttccacagtttaatatttttctcgaaaaaagtatatatattaccacttgaaac 561  Q
    |||||||||||||         |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  15857848 aacaagcatgcta-atttttttggaggagcatgcgtagttattcttccacagtttattatttttctagaaaaaagtatatatattaccacttgaaac 15857943  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 31781797 - 31781859
Alignment:
Q  15 ttaaaacacgatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcatt 77  Q
    |||||||| ||||||| |||| ||||||||||| ||||| || |||||||||||||| |||||    
T  31781797 ttaaaacatgatgatttttatgatcttgatggtgaaattttatttgaagaattaaaattcatt 31781859  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 37864691 - 37864791
Alignment:
Q  12 tatttaaaacacgatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcattgaagagattttaaatgttgaatcaaaatcaagtt 111  Q
    ||||||||||| | | |||| ||| ||||| ||||| |||||| | ||||||||||||||||||||  || ||||||||   ||||||||||||||||||    
T  37864691 tatttaaaacatggtaattcatatgatcttcatggtgaaattcaatttgaagaattaaaagtcattagagtgattttaacaattgaatcaaaatcaagtt 37864790  T
Q  112 t 112  Q
    |    
T  37864791 t 37864791  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 17896614 - 17896670
Alignment:
Q  49 aaattctacttgaagaattaaaagtcattgaagagattttaaatgttgaatcaaaat 105  Q
    |||||||| ||||| ||||| |||||||| | ||| |||||||||||||||||||||    
T  17896614 aaattctatttgaaaaattagaagtcattcacgaggttttaaatgttgaatcaaaat 17896670  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 48229214 - 48229314
Alignment:
Q  16 taaaacacgatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcattgaagagattttaaatgttgaatcaaaatcaagttttat 115  Q
    ||||||| |||||||||||| ||||||| ||| ||||| || ||||| ||||||||||||||  |||  ||||||  | ||||||||||| ||||| |||    
T  48229214 taaaacaagatgattcttatgatcttgacggtgaaattatatttgaataattaaaagtcattagagaagttttaacagatgaatcaaaataaagttatat 48229313  T
Q  116 g 116  Q
    |    
T  48229314 g 48229314  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 32393149 - 32393232
Alignment:
Q  230 taaattgaaattgttaaaattttatttgatatctac-atatcacaagacaaattaaatattattgcatttatttcaattgaaaa 312  Q
    |||||||||||||||||||| |||||||| |||||| |||| |||| | |||||| ||| | |||| || ||||||||||||||    
T  32393149 taaattgaaattgttaaaatcttatttgagatctacaatattacaatataaattatatagtcttgctttgatttcaattgaaaa 32393232  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 30140038 - 30140090
Alignment:
Q  64 aattaaaagtcattgaagagattttaaatgttgaatcaaaatcaagttttatg 116  Q
    ||||||||||| |  |||| |||||||||||||||||||||| ||||||||||    
T  30140038 aattaaaagtcctcaaagacattttaaatgttgaatcaaaattaagttttatg 30140090  T

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