View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2700_low_13 (Length: 549)
Name: NF2700_low_13
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 15 - 533
Target Start/End: Original strand, 4643719 - 4644238
Alignment:
| Q |
15 |
agatgaagaggagtatgatcaagctggatgtttgaaatggttaaacaagttttttgaataccataatgagctgcttcaaaccgaactacataagcttcga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4643719 |
agatgaagaggagtatgatcaagctggatgtttgaaatggttaaacaagttttttgaataccataatgagctgcttcaaaccgaactacataagcttcga |
4643818 |
T |
|
| Q |
115 |
gtgctgtatccttttactaatatcatctatgcagattatttcaatgctgcattgcagttgtacaaatccccagaacaatatggtagtctgcttgctaatc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4643819 |
gtgctgtatccttttactaatatcatctatgcagattatttcaatgctgcattgcagttgtacaaatctccagaacaatatggtagtctgcttgctaatc |
4643918 |
T |
|
| Q |
215 |
ct-tttactttttatgtcatatcaatgtatttgtgctgcaagtaagcattacaagttgcaacataaaagttcagtcatatagaactgttcatggttcagg |
313 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4643919 |
ctctttactttttatgtcatatcaatgtgtttgtgctgcaagtaagcattacaagttgcaacataaaagttcagtcatatagaactgttcagggttcagg |
4644018 |
T |
|
| Q |
314 |
aaggataccaaactgaatagttaaaacaatttggtaaaacgtaatcgaactgttcatagtcacctttnnnnnnncaaactatactttttcgacatttttt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4644019 |
aaggataccaaactgaatagttaaaacaatttggtaaaacgtaaccgaactgttcatagtcacctttaaaaaaacaaactatactttttcgacatttttt |
4644118 |
T |
|
| Q |
414 |
gcagacctcattgtaacaaatttttattattaactgataattaggaatgttgaaaaaagcccaaaatcgaaccaaattgaatagtatgactgtttnnnnn |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4644119 |
gcagacctcattgtaacaaatttttattattaactgataattaggaatgttgagaaaagcccaaaatcgaaccaaattgaatagtatgactgtttaaaaa |
4644218 |
T |
|
| Q |
514 |
nnctgaagaactgttaaatt |
533 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4644219 |
aactgaagaactgttaaatt |
4644238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 4661604 - 4661784
Alignment:
| Q |
15 |
agatgaagaggagtatgatcaagctggatgtttgaaatggttaaacaagttttttgaataccataatgagctgcttcaaaccgaactacataagcttcga |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
4661604 |
agatgaagatgagtatgatcaagctggatgtttgacatggttaaacaagttttttgaatatcataatgagctgcttcaaatcgaactaaataggcttcga |
4661703 |
T |
|
| Q |
115 |
gtgctgtatccttttactaatatcatctatgcagat--tatttca--atgctgcattgcagttgtacaaatccccagaaca |
191 |
Q |
| |
|
|| |||||| |||| |||||||||||||||||||| ||||||| ||||||||||||||| |||||||| |||||||| |
|
|
| T |
4661704 |
gtcttgtatcattttgctaatatcatctatgcagattatatttcaatatgctgcattgcagtgttacaaatctccagaaca |
4661784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 472
Target Start/End: Original strand, 7426013 - 7426046
Alignment:
| Q |
439 |
attattaactgataattaggaatgttgaaaaaag |
472 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
7426013 |
attattaactgataattaggactgttgaaaaaag |
7426046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 508
Target Start/End: Original strand, 51215749 - 51215834
Alignment:
| Q |
423 |
attgtaacaaatttttattattaactgataattaggaatgttgaaaaaagcccaaaatcgaaccaaattgaatagtatgactgttt |
508 |
Q |
| |
|
|||||| |||||| ||||||||| ||||||||||| ||||||| ||| || |||| ||||||||||||| ||||||||||| |
|
|
| T |
51215749 |
attgtaccaaattgctattattaattgataattagggctgttgaagaaaaccaaaaacgaaaccaaattgaattttatgactgttt |
51215834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University