View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_14 (Length: 523)
Name: NF2700_low_14
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_14 |
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| [»] scaffold2134 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 4966704 - 4966936
Alignment:
| Q |
1 |
acatgccaattatgctccctatgcatctaaaaactcaaccagcccctttcaactgtccttccctgcaatatatatacgtatgtttgcataacatattcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||| | |||||||| |||||||| ||||||| ||||| |
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| T |
4966704 |
acatgccaattatgctccctatgcatctaaaaactcaaccggcccctttcccatgtccatccctgtagtatatatatgtatgtttacataacagattcat |
4966803 |
T |
|
| Q |
101 |
tcgcagtttctaaacaaaattcttgaaaaacaaaatattcacttccctttttatataatggctgatcgtcctctaactgcgttgttgacctaccattgcc |
200 |
Q |
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| T |
4966804 |
ttgcagtttctaaacaaaatccttcaaaaacataatattcacttccctttttatataatggttgatcgtcctctaactgcgttgttgacctaccattgcc |
4966903 |
T |
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| Q |
201 |
tgaccggtatttacaagccagatttgttttgta |
233 |
Q |
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||||||||||||||| |||||||||||| |||| |
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| T |
4966904 |
tgaccggtatttacatgccagatttgttgtgta |
4966936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 9888755 - 9888523
Alignment:
| Q |
1 |
acatgccaattatgctccctatgcatctaaaaactcaaccagcccctttcaactgtccttccctgcaatatatatacgtatgtttgcataacatattcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||| | |||||||| |||||||| ||||||| ||||| |
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| T |
9888755 |
acatgccaattatgctccctatgcatctaaaaactcaaccggcccctttcccatgtccatccctgtagtatatatatgtatgtttacataacagattcat |
9888656 |
T |
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| Q |
101 |
tcgcagtttctaaacaaaattcttgaaaaacaaaatattcacttccctttttatataatggctgatcgtcctctaactgcgttgttgacctaccattgcc |
200 |
Q |
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| T |
9888655 |
ttgcagtttctaaacaaaatccttcaaaaacataatattcacttccctttttatataatggttgatcgtcctctaactgcgttgttgacctaccattgcc |
9888556 |
T |
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| Q |
201 |
tgaccggtatttacaagccagatttgttttgta |
233 |
Q |
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| T |
9888555 |
tgacccgtatttacatgccagatttgttgtgta |
9888523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2134 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold2134
Description:
Target: scaffold2134; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 307 - 435
Target Start/End: Original strand, 292 - 420
Alignment:
| Q |
307 |
ttgtaggacctttgattcgaaaccctaccacagagattgataaaacggtcaacaaacttcggttgaaatataggacgtattccatagattatgaagttga |
406 |
Q |
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| T |
292 |
ttgtaggacctttgatcaaaaacccttccacagagattaacaagacgattaagaaacttcgtttgaagtattggacgtacacgatagattacgaagttga |
391 |
T |
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| Q |
407 |
ttgtgtgcgtttaaatttgttgctatttt |
435 |
Q |
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| T |
392 |
ttgtgtgggtttaaatgtgctgctatttt |
420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28926340 - 28926388
Alignment:
| Q |
1 |
acatgccaattatgctccctatgcatctaaaaactcaaccagccccttt |
49 |
Q |
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| T |
28926340 |
acatgccaattatgctccctatgcatcttaaaactccaccggccccttt |
28926388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 37337940 - 37337989
Alignment:
| Q |
369 |
ttgaaatataggacgtattccatagattatgaagttgattgtgtgcgttt |
418 |
Q |
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| T |
37337940 |
ttgaagtataggacgtacaccatagattgtgaagttgattgtgtgggttt |
37337989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37605226 - 37605186
Alignment:
| Q |
1 |
acatgccaattatgctccctatgcatctaaaaactcaacca |
41 |
Q |
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| T |
37605226 |
acatgccaattatgctccctatgcatattaaaactccacca |
37605186 |
T |
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