View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2700_low_17 (Length: 476)
Name: NF2700_low_17
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 254 - 460
Target Start/End: Complemental strand, 5752355 - 5752149
Alignment:
| Q |
254 |
tcctttccaaatacgggcaagttcacccaatgccaaatcccatcccttttcagtgctctttgcactgatcagattcatcccttatgcgtaaccacagatc |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||| ||||||||||||||||| |||||||| ||| ||| |
|
|
| T |
5752355 |
tcctttccaaatacgggcaagttcacccaattccaaatcccaacccttttcagcactctttgcacggatcagattcatcccttgtgcgtaactacaaatc |
5752256 |
T |
|
| Q |
354 |
ttggctgcgtaaagagccttcctaacatcatcaatcaactgcttcttgtcaacttgttggtcggtcaagatatcgccaaaaccacctgatttaaagacca |
453 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5752255 |
ttggctgcataaagagccttcctaacatcatcaatcaactgcttcttgtctacttgttggtcagtcaagatatcgccaaagccacctgatttaaagacct |
5752156 |
T |
|
| Q |
454 |
ttgcagc |
460 |
Q |
| |
|
||||||| |
|
|
| T |
5752155 |
ttgcagc |
5752149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 5752614 - 5752456
Alignment:
| Q |
20 |
cgaagtagtctcgttgagctcgcaccaaattaggtggcaacctttcccttctataagtgtcaaaatatgcaagactagcatacatacctgggatgctgat |
119 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
5752614 |
cgaagtagtctcgttgagcttgcaccaaattagctggcaacctttcccttctataagagtcaaaatatgcaagactagcagacatacccgggaggctgat |
5752515 |
T |
|
| Q |
120 |
acctgaattgacagcaagggaaacaactctcctccatgcggtttggcattcaattattt |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5752514 |
acctgaattgacagcaagggaaacaactctcctccatgcggtttggcgttcaattattt |
5752456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 5752452 - 5752399
Alignment:
| Q |
194 |
ttgcgaactttggatccacaagaaggtttgtaagattaggg-ttctgtcgtacg |
246 |
Q |
| |
|
||||||||| |||||||||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
5752452 |
ttgcgaactctggatccacaagaaggttagcgagattagggtttctgtcgtacg |
5752399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University