View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_18 (Length: 475)
Name: NF2700_low_18
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 22 - 465
Target Start/End: Complemental strand, 10760551 - 10760108
Alignment:
| Q |
22 |
tggacaacgtacaatttgttcgtgaagcctaatcgagtaaagttgaaccggttcttgagtgagacgaggttttgagtcatcatctgaagagtaaacacat |
121 |
Q |
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| T |
10760551 |
tggacaacgtacaatttgttcgtgaagcctaatcgagtaaagttgaaccggttcttgagtgagacgaggttttgagtcatgatctgaagagtaaacacat |
10760452 |
T |
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| Q |
122 |
tgaaggtcatgtttggtgtgatagcgaaaagataaagggtagtttaagaacattaaaacatgatcaggaagcataactgtttcccgaattgtgatttggg |
221 |
Q |
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| T |
10760451 |
tgaaggtcacgtttggtgtgatagcgaaaagataaagggtagtttaagaaaattaaaacatgatcaggaagcaaaactgtttcccgaattgtgatttggg |
10760352 |
T |
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| Q |
222 |
gtggcactggagttggccatttcaaagctgcaattgggatgtgaaatcgagggaggtagaaggggtggatggatgaaataattagggaggtaaagataat |
321 |
Q |
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| T |
10760351 |
gtggcactggagttggccatttcaaagctgcaattgggatgtgaaatcgagggaggtagaaggggtggatggatgaaataattagggaggtaaagataat |
10760252 |
T |
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| Q |
322 |
ggaagataagacaaccacaatagtgaaccagaagaatgtgctccatgaaatggctctgctatgttttctatgatctttcatgagagaaacccaaaacgag |
421 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10760251 |
ggaagataagacaaccacaatagtgaaccaaaagaatgtgctccatgaaatggctctgctatgttttctatgatctttcatgagagaaacccaaaacgag |
10760152 |
T |
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| Q |
422 |
aagaaaaatgtaatagtaatgttctttgggttgcttcatctcac |
465 |
Q |
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| T |
10760151 |
aagaaaaatgtaatagtaatgttctttgggttgcttcatgtcac |
10760108 |
T |
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