View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_23 (Length: 429)
Name: NF2700_low_23
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 36339324 - 36338910
Alignment:
| Q |
1 |
gttccatgacttgctcacacacttgaatcgcacaatggttttcacgctaagtaacaataggatttcggcgatgagttcgcggggaatgcacaccggcagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36339324 |
gttccatgacttgctcacacacttgaatcgcacaatggttttcacgctaagtaacaataggatttcggcgatgagttcgcggggaatgcacaccggcagc |
36339225 |
T |
|
| Q |
101 |
aatggcgcgtttgactgacgacgtttcttaatcggagggatatccattagggcagtgtctgtgatgttgaaatggaaaacctgaaaccctaacaagaaag |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36339224 |
aatggcgcgttcgactgacgacgtttcttaatcggagggatatccattagggcagtgtctgtgatgttgaaatggaaaacctgaaaccctaacaagagag |
36339125 |
T |
|
| Q |
201 |
agtctaaaatgagtgcaaagttgatgcttatgaaaataaatttagggtatcaggttgaaaaactgtggaataaacctttagcatgaatcaggggtcaggg |
300 |
Q |
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| T |
36339124 |
aatctaaaatgagtgcaaagtcgatgcttatgaaaataaatttagggtatcaggttgaaaaactgtggaataaacctttagcatgaatcaggggtcaggg |
36339025 |
T |
|
| Q |
301 |
catcaaaattgaag-nnnnnnntaaagtaattgacacaaaacagttgctagcataatataaataataatgaaagtaaagaccctaaactaatacaaacag |
399 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36339024 |
catcaaaattgaagaaaaaaaataaagtaattgacacaaaacagttgctagcataatataaataatagtgaaagtaaagaccctaaactaatacaaacag |
36338925 |
T |
|
| Q |
400 |
ttcaatagtagagac |
414 |
Q |
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| T |
36338924 |
ttcaatagtagagac |
36338910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 5978236 - 5978090
Alignment:
| Q |
1 |
gttccatgacttgctcacacacttgaatcgcacaatggttttcacgctaagtaacaataggatttcggcgatgagttcgcggggaatgcacaccggcagc |
100 |
Q |
| |
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||||||||||||| |||| ||||||||||| | ||||||||||||||||| ||| ||||||||||| ||||||||||| ||||| |||||||| |
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| T |
5978236 |
gttccatgacttgttcacgcacttgaatcgtgcgatggttttcacgctaaggaacgataggatttcgacgatgagttcgtcaggaatcaacaccggcgtg |
5978137 |
T |
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| Q |
101 |
aatggcgcgtttgactgacgacgtttcttaatcggagggatatccat |
147 |
Q |
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||||||| ||| ||||||| | |||||||||||| ||||||||| |
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| T |
5978136 |
aatggcgggttggactgacattgattcttaatcggacagatatccat |
5978090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 33575394 - 33575247
Alignment:
| Q |
1 |
gttccatgacttgctcacacacttgaatcgcacaatggttttcacgctaagtaacaataggatttcggcgatgagttcgcggggaatgcacaccggcagc |
100 |
Q |
| |
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|||| |||| ||||| || ||| ||||| ||| |||||||||||||| || || |||||||| || |||||||||| ||||||| |||||||| || |
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| T |
33575394 |
gttctatgatttgcttacgcacctgaattgcatgatggttttcacgctgaggaaacataggattagggagatgagttcgttgggaatgaacaccggcggc |
33575295 |
T |
|
| Q |
101 |
aatggcgcgtttgactgacgacgt---ttcttaatcggagggatatcc |
145 |
Q |
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||||||| ||| || ||| || || ||||||||||||||||||||| |
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| T |
33575294 |
aatggcgtgttggattgaagatgttgcttcttaatcggagggatatcc |
33575247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 19747552 - 19747630
Alignment:
| Q |
1 |
gttccatgacttgctcacacacttgaatcgcacaatggttttcacgctaagtaacaataggatttcggcgatgagttcg |
79 |
Q |
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||||||||||||||||||||| || ||| ||| |||||||||||| |||| || |||||||||| ||||| |||||| |
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| T |
19747552 |
gttccatgacttgctcacacattttaattgcatgatggttttcacgttaagaaaggataggatttctgcgataagttcg |
19747630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 11346001 - 11346075
Alignment:
| Q |
1 |
gttccatgacttgctcacacacttgaatcgcacaatggttttcacgctaagtaacaataggatttcggcgatgag |
75 |
Q |
| |
|
|||||||||||||||||| || |||||| | ||||||||||||||| ||||||| ||||||||||||| ||||| |
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| T |
11346001 |
gttccatgacttgctcacgcatttgaattggacaatggttttcacgttaagtaatgataggatttcggctatgag |
11346075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23839914 - 23839864
Alignment:
| Q |
1 |
gttccatgacttgctcacacacttgaatcgcacaatggttttcacgctaag |
51 |
Q |
| |
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||||||||||||||||||||| |||||||||| |||||||||||| |||| |
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| T |
23839914 |
gttccatgacttgctcacacatttgaatcgcaagatggttttcacgttaag |
23839864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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