View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_26 (Length: 419)
Name: NF2700_low_26
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 275
Target Start/End: Complemental strand, 50329477 - 50329213
Alignment:
| Q |
12 |
aagaaaaacaaaaaccataagcccttcctgtttgatatatttgttatcttnnnnnnn-gcatcaaatatatcaaacagtgaagacttttaaattttactc |
110 |
Q |
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| T |
50329477 |
aagaaaaacaaaaaccataagcccttcctgtttgatatatttgttatcttaaaaaaaagcatcaaatatatcaaacagtgaagacttttgaattttactc |
50329378 |
T |
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| Q |
111 |
ttgagacaacaaaaacaaatattattattaacaccccttcgatttcaggaattatgcgatgaaataataatagacaacacacctaacatttgaaattgaa |
210 |
Q |
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| T |
50329377 |
ttgagacaacaaaaacaaatattattattaacaccccttcgatttcaggaattatgcgatgaaataataatagacaacacaactaacatttgaaattgaa |
50329278 |
T |
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| Q |
211 |
actgaattaatgaaacaacatttccaacaaagataaagccatgaagttttactaataatgaattg |
275 |
Q |
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| T |
50329277 |
actgaattaatgaaacaacacttccaacaaagataaagccatgaagttttactaataatgaattg |
50329213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 50329138 - 50329054
Alignment:
| Q |
318 |
gttgaatagttattgagttgattggtgaaattgaaacacatgaatgaaattaaattaaataaataaagagtgtgatatctgagat |
402 |
Q |
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| T |
50329138 |
gttgaatagttattgagttgattggtgaaattgaaacacatgaatgaaatgaaattaaataaataaagagtgtgatatctgagat |
50329054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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