View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700_low_3 (Length: 752)

Name: NF2700_low_3
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700_low_3
NF2700_low_3
[»] chr3 (3 HSPs)
chr3 (255-742)||(31872251-31872723)
chr3 (113-218)||(31872760-31872865)
chr3 (1-46)||(31872951-31872996)
[»] chr2 (5 HSPs)
chr2 (116-213)||(8145852-8145950)
chr2 (116-217)||(30545031-30545133)
chr2 (116-217)||(44154624-44154726)
chr2 (115-183)||(29057945-29058013)
chr2 (115-175)||(29053375-29053434)
[»] chr4 (3 HSPs)
chr4 (116-213)||(33464217-33464314)
chr4 (120-211)||(48569716-48569808)
chr4 (308-354)||(33464150-33464195)
[»] chr5 (2 HSPs)
chr5 (116-213)||(6007038-6007135)
chr5 (113-185)||(35757617-35757689)


Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 255 - 742
Target Start/End: Complemental strand, 31872723 - 31872251
Alignment:
Q  255 aattaatcagacttattattttatgttaagagagtagtatcggattttctctctcgttttggttttgtattagctcaaaagatattcttctttatggaat 354  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31872723 aattaatcagacttattattatatgttaagagagtagtatcggattttctctctcgttttggttttgtattagctcaaaagatattcttctttatggaat 31872624  T
Q  355 tcggtagttttattgctctgaatctcgttcggttgtggtttaannnnnnnnnnnnnnnnnnnggattattctaaatttggcgtacgttaatgcagcgttg 454  Q
    |||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||||||||||||||    
T  31872623 tcggtagttttattgctctgaatctcgttcggttgtggtttaattttttattttgagtttttggattattctaaatttggcgtacgttaatgcagcgttg 31872524  T
Q  455 atttgtccacgctttgatatattgattttgttatgttgttttgcctgatacatgaagttaagtgttggttttaggaattctcatgttaggtagatctcgc 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31872523 atttgtccacgctttgatatattgattttgttatgttgttttgcctgatacatgaagttaagtgttggttttaggaattctcatgttaggtagatctcgc 31872424  T
Q  555 acctttggaaataggatatgttttcaacttgttagtattaataaaaaattgtataggaacatcttatagagtctaccaaggttatgtgaatgttttttgg 654  Q
    ||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||    
T  31872423 acctttggaaataggatatgttttcaacttgttagtattaat---------------aacatcttatagagtctaccaaggttatgtgaatgttttttgg 31872339  T
Q  655 tgtttagttgttttgaatcactgaagccacacttttttcaaccaaaaagtgttggcaattgacttgaaatactatggttgatcctatg 742  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31872338 tgtttagttgttttgaatcactgaagccacacttttttcaaccaaaaagtgttggcaattgacttgaaatactatggtggatcctatg 31872251  T

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Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 31872865 - 31872760
Alignment:
Q  113 tgcagtggaagaagaagcgtatgaggaggttgaagaggaagcgccgaaagatgagacagagatccaagtagtgtgtttgttcttcgacaacatcaagtga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31872865 tgcagtggaagaagaagcgtatgaggaggttgaagaggaagcgccgaaagatgagacagagatccaagtagtgtgtttgttcttcgacaacatcaagtga 31872766  T
Q  213 tcttaa 218  Q
    ||||||    
T  31872765 tcttaa 31872760  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 31872996 - 31872951
Alignment:
Q  1 tcatccgttttcaagaatcatgcgtgccaaggttagatccattgca 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31872996 tcatccgttttcaagaatcatgcgtgccaaggttagatccattgca 31872951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 9e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 8145950 - 8145852
Alignment:
Q  116 agtggaagaagaagcgtatgaggaggttgaagaggaagcgccgaaagatgagacagagatccaagtagtgtgtttgttcttcg-acaacatcaagtgat 213  Q
    ||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||| || |||||||||||||||    
T  8145950 agtggaagaagaagcatatgaggaggttgaagaggaagcaacgaaagatgagacagagatccaagtagtctgtttgttctccgaacaacatcaagtgat 8145852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 30545133 - 30545031
Alignment:
Q  116 agtggaagaagaagcgtatgaggaggttgaagaggaagcgccgaaagatgagacagagatccaagtagtgtgtttgttcttcg-acaacatcaagtgatc 214  Q
    ||||||||||||||| |||||||||||||||||||||||  | |||||||||||| |||||||||||||||||||||| | || ||||||||||||||||    
T  30545133 agtggaagaagaagcatatgaggaggttgaagaggaagcaacaaaagatgagacaaagatccaagtagtgtgtttgttatccgaacaacatcaagtgatc 30545034  T
Q  215 tta 217  Q
    |||    
T  30545033 tta 30545031  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 44154624 - 44154726
Alignment:
Q  116 agtggaagaagaagcgtatgaggaggttgaagaggaagcgccgaaagatgagacagagatccaagtagtgtgtttgttcttc-gacaacatcaagtgatc 214  Q
    ||||||||||||||| |||||||||||||||||||||||  |||||||||||||| |||||||| ||||||||||||| | |  ||||||||||||||||    
T  44154624 agtggaagaagaagcatatgaggaggttgaagaggaagcaacgaaagatgagacaaagatccaattagtgtgtttgttatccaaacaacatcaagtgatc 44154723  T
Q  215 tta 217  Q
    |||    
T  44154724 tta 44154726  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 29058013 - 29057945
Alignment:
Q  115 cagtggaagaagaagcgtatgaggaggttgaagaggaagcgccgaaagatgagacagagatccaagtag 183  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29058013 cagtggaagaagaagcgcatgaggaggttgaagaggaagcgccgaaagatgagacagagatctaagtag 29057945  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 29053434 - 29053375
Alignment:
Q  115 cagtggaagaagaagcgtatgaggaggttgaagaggaagcgccgaaagatgagacagagat 175  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  29053434 cagtggaagaagaagcgcatgaggaggttgaagagaaagcgccg-aagatgagacagagat 29053375  T

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Target: chr4 (Bit Score: 70; Significance: 4e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 33464314 - 33464217
Alignment:
Q  116 agtggaagaagaagcgtatgaggaggttgaagaggaagcgccgaaagatgagacagagatccaagtagtgtgtttgttcttcgacaacatcaagtgat 213  Q
    ||||||||||||||| |||||||||||||||||||||||  ||||||||||||||  ||||||||||||||||||||||| | |||||||||||||||    
T  33464314 agtggaagaagaagcatatgaggaggttgaagaggaagcaacgaaagatgagacatcgatccaagtagtgtgtttgttctccaacaacatcaagtgat 33464217  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 48569808 - 48569716
Alignment:
Q  120 gaagaagaagcgtatgaggaggttgaagaggaagcgccgaaagatgagacagagatccaagtagtgtgtttgttcttcg-acaacatcaagtg 211  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||| || |||||||||||||    
T  48569808 gaagaagaagcatatgaggaggttgaagaggaagcaacgaaagatgagatagagatccaagtagtgtgtttgttctccgaacaacatcaagtg 48569716  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 308 - 354
Target Start/End: Complemental strand, 33464195 - 33464150
Alignment:
Q  308 tcgttttggttttgtattagctcaaaagatattcttctttatggaat 354  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  33464195 tcgttttggttctgtattagctc-aaagatattgttctttatggaat 33464150  T

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Target: chr5 (Bit Score: 66; Significance: 9e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 6007038 - 6007135
Alignment:
Q  116 agtggaagaagaagcgtatgaggaggttgaagaggaagcgccgaaagatgagacagagatccaagtagtgtgtttgttcttcgacaacatcaagtgat 213  Q
    ||||||||||||||| |||||||| ||||||||||||||  ||||||||||||||  ||||||||||||||||||||||| | |||||||||||||||    
T  6007038 agtggaagaagaagcatatgaggatgttgaagaggaagcaacgaaagatgagacatcgatccaagtagtgtgtttgttctccaacaacatcaagtgat 6007135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 35757689 - 35757617
Alignment:
Q  113 tgcagtggaagaagaagcgtatgaggaggttgaagaggaagcgccgaaagatgagacagagatccaagtagtg 185  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  35757689 tgcagtggaagaagaagcgtatgaggagattgaagaggaagcgccgaaagatgagacagagatctaagtagtg 35757617  T

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