View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_31 (Length: 371)
Name: NF2700_low_31
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 5 - 356
Target Start/End: Complemental strand, 8343466 - 8343108
Alignment:
| Q |
5 |
actcataacgtgtttcatataattgtcgtcactaagaatattttagattaatgagtgtatttcttcctttatgttctannnnnnnn--ataccaatagat |
102 |
Q |
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| T |
8343466 |
actcataacgtgtttcatataattgtcgtcactaagaatattttagattaatgagtgtatttcttcctttatgttctattttttttttataccaatagat |
8343367 |
T |
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| Q |
103 |
atatttttgttatgattttctatataaacaaaagtttatgagatagattattt--gttataacctagcatatatggtgtgcaaatgttaaattttctctt |
200 |
Q |
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| T |
8343366 |
atatttttgttatgattttctatataaacaaaagtttatgaaatagattatttttgttataacctagcatatatggtgtgcaaatgttaaattttctctt |
8343267 |
T |
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| Q |
201 |
tagaaactttattttgatctcattaatttaagactctt---agaccaattggaaataggaatgatttagatattatatatcgcataaaacttccatatca |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8343266 |
tagaaactttattttgatctcattaatttaagactcttgttagaccaattggaaataggaatgatttagatattatatatcgcataaaacttccatatca |
8343167 |
T |
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| Q |
298 |
ctcattcataccgatttatgtatccagtgaattcatgtggtggttgtcggggtttatgg |
356 |
Q |
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| T |
8343166 |
ctcattcataccgatttatgtatccagtgaattcatgtggtggttgtcggggtttatgg |
8343108 |
T |
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