View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_32 (Length: 369)
Name: NF2700_low_32
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_32 |
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| [»] scaffold0606 (2 HSPs) |
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Alignment Details
Target: scaffold0606 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: scaffold0606
Description:
Target: scaffold0606; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 117 - 346
Target Start/End: Original strand, 6595 - 6826
Alignment:
| Q |
117 |
tatcaagtttgtttcaaagcaaaattcata---tatcctaacaatcttgaagcgatgaaggtgcttaaatggaggttcaaatgtttgaggaagaagatat |
213 |
Q |
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| T |
6595 |
tatcaagtttctttcaaagcaaaattcatactatatcctaacaatcttgaagtgatgaaggtgcttaaatggaggttcaaatgtttgaggaagaagatac |
6694 |
T |
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| Q |
214 |
aatttatggatttagatgaggtatatgaattaacttgtctcttttcaattactatgaa-gataatgtcgtctcttaattcaatcaaataatatgtaggca |
312 |
Q |
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| T |
6695 |
aatttatggatttagatgaggtatatgaattaacttgtctcttttcaat--gtgtgaaggatcatgccgtctcttaattcaatcaaataatatgtaggca |
6792 |
T |
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| Q |
313 |
atatcatgacacaatggactgacatattggaaga |
346 |
Q |
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| T |
6793 |
atatcatgacatagtggactgacatattggaaga |
6826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0606; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 6565 - 6599
Alignment:
| Q |
14 |
aaatcaacattactaacttgagaacttaaatatca |
48 |
Q |
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| T |
6565 |
aaatcaacattactaacttgagaactgaaatatca |
6599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 128 - 264
Target Start/End: Complemental strand, 16918071 - 16917936
Alignment:
| Q |
128 |
tttcaaagcaaaattcatatatcctaacaatcttgaagcgatgaaggtgcttaaatggaggttcaaatgtttgaggaagaagatataatttatggattta |
227 |
Q |
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| T |
16918071 |
tttcaaagcaaaattcatataacctaaaaaaatggaggcgatgaattttcttaaatggaggttc-attgtttgaagaagaagatacaatatagagattta |
16917973 |
T |
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| Q |
228 |
gatgaggtatatgaattaacttgtctcttttcaatta |
264 |
Q |
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| T |
16917972 |
gaacacgtataacgattaacttatctctttttaatta |
16917936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 16918327 - 16918444
Alignment:
| Q |
207 |
aagatataatttatggatttagatgaggtatatgaattaacttgtctcttttcaattactat-gaagataatgtcgtctcttaattcaatcaaataatat |
305 |
Q |
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|||||| |||||||| ||||| || |||||| | | || |||||||||||||||||| | | | ||| || | |||||||||||||||| ||||| || |
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| T |
16918327 |
aagatacaatttatgaatttatattaggtattaggactatcttgtctcttttcaattattgttggtgatcatattgtctcttaattcaatctaataacat |
16918426 |
T |
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| Q |
306 |
gtaggcaatatcatgaca |
323 |
Q |
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||| |||||||||||||| |
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| T |
16918427 |
gtacgcaatatcatgaca |
16918444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 15772788 - 15772710
Alignment:
| Q |
79 |
tcaagtgattcattccacgtctattcataaataagtgttatcaagtttgtttcaaagcaaaattcatatatcctaacaa |
157 |
Q |
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| T |
15772788 |
tcaagtgatccatttcccatgtattcataaacaagcgctatcaagtttctttcaaagcaaaatccatataacctaacaa |
15772710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 15795180 - 15795273
Alignment:
| Q |
79 |
tcaagtgattcattccacgtctattcataaataagtgttatcaagtttgtttcaaagcaaaattcatatatcctaacaatcttgaagcgatgaa |
172 |
Q |
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| T |
15795180 |
tcaagtgatccatttcccatgtattcataaacaagtgctatcaagtttttctcaaagcaaaatccaaatagcttaacaagattgaagtgatgaa |
15795273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 10365515 - 10365575
Alignment:
| Q |
136 |
caaaattcatatatcctaacaatcttgaagcgatgaaggtgcttaaatggaggttcaaatg |
196 |
Q |
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||||||||||||| |||||| | || ||| |||||||||||||||||||||||| ||||| |
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| T |
10365515 |
caaaattcatataccctaaccagatttaagtgatgaaggtgcttaaatggaggtttaaatg |
10365575 |
T |
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