View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2700_low_33 (Length: 369)
Name: NF2700_low_33
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 20001382 - 20001737
Alignment:
| Q |
1 |
acttactgataaactagcgttcttcaattacaaatctctcaatattggagaaaaatcaaaattgaatagacattataaataatctctataatcgcatata |
100 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
20001382 |
acttactgctaaactagtgttctacaattacaaatctctcgatattggagaaaaatcaaaattgaatagacattataaaaa--ctctataatcgcctata |
20001479 |
T |
|
| Q |
101 |
taatcttccaccaatcaagcacaatttaatttaaaccctgtatccaattacacaatccactatcattacctacactgaaaccctaaaaagtagcataatc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||| |
|
|
| T |
20001480 |
taatcttccaccaatcaagcaaaatttaatttaaacccagtatccaattacacaatccactatcattatctacacggaaaccctataaagtagcataatc |
20001579 |
T |
|
| Q |
201 |
ctactccatttgaaaccgaatttttatagataaaacacatatacataatgagtacagtattgtcataacaca--tctaactattttttgaagagttaacc |
298 |
Q |
| |
|
||| |||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
20001580 |
ctattccatttgaaaccg-atttttttagataaaacacgtatacataatgagtacagtattgtcataacacatctctaactattttgtgaagtgttaacc |
20001678 |
T |
|
| Q |
299 |
ctccgatttcgaggagaaaaggtcctgacagttcggtctttatcccatatgaaagtaat |
357 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
20001679 |
ctccgatttcgaggagaaaaggtccggacagttcggtgtttatcccatatgaaagtaat |
20001737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 20030511 - 20030602
Alignment:
| Q |
177 |
gaaaccctaaaaagtagcataatcctactccatttgaaaccgaatttttatagataaaacacatatacataatgagtacagtattgtcataa |
268 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||||| |||||||| | | |||| || |||||||||||||||||| || ||||||| |
|
|
| T |
20030511 |
gaaaccctaaaaaatatcataatcctactccaattgaaactgaatttttgaaaacaaaaaacgtatacataatgagtacaggatagtcataa |
20030602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 20010773 - 20010835
Alignment:
| Q |
103 |
atcttccaccaatcaagcacaatttaatttaaaccctgtatccaattacacaatccactatca |
165 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| ||||||| || ||||||||| |||||||| |
|
|
| T |
20010773 |
atcttccaccaatcaaacacaatgtaatttaaatcctgtattcatttacacaatacactatca |
20010835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 20030389 - 20030438
Alignment:
| Q |
52 |
aaaatcaaaattgaatagacatt-ataaataatctctataatcgcatata |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||| ||||||| |||| |
|
|
| T |
20030389 |
aaaatcaaaattgaatagacattaaaaaataatctctgtaatcgcttata |
20030438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 38193401 - 38193450
Alignment:
| Q |
26 |
aattacaaatctctcaatattggagaaaaatcaaaattgaatagacatta |
75 |
Q |
| |
|
||||||||||| |||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
38193401 |
aattacaaatccctcaattttggaaaacaatcaaaattgaatagacatta |
38193450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 12571450 - 12571417
Alignment:
| Q |
51 |
aaaaatcaaaattgaatagacattataaataatc |
84 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
12571450 |
aaaaatcaaaattgaatagacattaaaaataatc |
12571417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University