View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_34 (Length: 354)
Name: NF2700_low_34
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 43759941 - 43759626
Alignment:
| Q |
16 |
gagacaatttcggtgtcattaatttttaatcataatcagtggcacaagattaacattcatcatgtgtgtatcatgacattaaattaaattcaagacaaaa |
115 |
Q |
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| T |
43759941 |
gagacaatttcggtgtcattaatttttaatcataatcagtggcacaagattaacattcatcatgtgtgtatcatgacattaaattaaattcaagacaaaa |
43759842 |
T |
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| Q |
116 |
aggaaataatttatttaaaatattttctatataaagaataatttgcccgtacgcgtcaagcgtaagtaataaataatagagcgtgacgcgaattaaaatg |
215 |
Q |
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| T |
43759841 |
aggaaataatttatttaaaatattttctatataaagaataatttgcccgtacgcgtcaagcgtaag---taaataatagagcgtgacgcgaattaaaatg |
43759745 |
T |
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| Q |
216 |
tggtaatgatataattaaaaatctgagagcgnnnnnnnnnnnnnnnnggtagatattcttcctagcttagtttttaagtggcattaatgactaatgggcg |
315 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43759744 |
tggtaatgatataattaaaaatctgagagc----acacacacacacaggtagatattcttcctagcttagtttttaagtggcattaatgactaatgggcg |
43759649 |
T |
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| Q |
316 |
ttacatatacctaataaaaatag |
338 |
Q |
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||||||||||||||||||||||| |
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| T |
43759648 |
ttacatatacctaataaaaatag |
43759626 |
T |
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