View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_35 (Length: 354)
Name: NF2700_low_35
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 337
Target Start/End: Original strand, 43062982 - 43063303
Alignment:
| Q |
15 |
atgcaaagatattagatacatgtttgagaatcttataataaggatgactgacttatcctatagtgccaaagttcaaaagaattggaattacaagtattat |
114 |
Q |
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| T |
43062982 |
atgcaaagatattggatacatgtttgagaatcttataataaggatgactgacttatcctatagtgccaaagttcaaaagaattggaattacaagtattat |
43063081 |
T |
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| Q |
115 |
acacattgcaaaaagaagcattcgttgatgtgagatcctcgatatagtcatggattagttctgcacgcccaatcgtcctcatagatgtgatatcctgaac |
214 |
Q |
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| T |
43063082 |
acacattgcaaaaagaagcattcgttgatgtgagatcctcgatatagtcatggattagttctgcacgcccaatcgtcctcatagatgtgatatcctgaac |
43063181 |
T |
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| Q |
215 |
acaacagtttnnnnnnngaaagataatttgataagaatcaatattcaacaatttggtaaaccacatggaaaccatcctaagaggaccacagccttttcca |
314 |
Q |
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| T |
43063182 |
acaacagtttaaaaaaa-aaagataatttgataagaatcaatattcaacaatttggtaaaccacatggaaaccatcctaagaggaccacaaccttttcca |
43063280 |
T |
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| Q |
315 |
taagaaacaccagaagatcctct |
337 |
Q |
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| T |
43063281 |
taagaaacaccagaagatcctct |
43063303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 43184178 - 43184082
Alignment:
| Q |
19 |
aaagatattagatacatgtttgagaatcttataataaggatgactgacttatcctatagtgccaaagttcaaaagaattggaattacaagtattatacac |
118 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43184178 |
aaagatattggatacatgtttgagaatcttataataaggatgaccta-------tatagtgccaaagttcaaaagaattggaattacaagtattagacac |
43184086 |
T |
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