View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_36 (Length: 346)
Name: NF2700_low_36
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 331
Target Start/End: Original strand, 24066768 - 24067091
Alignment:
| Q |
8 |
gagcacagaatgcacatggaaaatgatacaaccttaaaaagattatttcaaccagttaaagtggttgaaccatctgttgaagaaaccatagaaattctta |
107 |
Q |
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| T |
24066768 |
gagcacagaatgcacatggaaaatgatacaaccttaaaaagaatatttcaaccagttaaagtggttgaaccatctgttgaagaaaccatagaaattctta |
24066867 |
T |
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| Q |
108 |
aaggcctccgcggaacatatgagtcgcattataaacttcattacacagatgaagctcttgttgcagctgcaaatttgtctcagcaatatgtaaggtaaaa |
207 |
Q |
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| T |
24066868 |
aaggcctccgcggaacatatgagtcgcattataaacttcattacacagatgaagctcttgttgcagctgcaaatttgtctcagcaatatgtaaggtaaaa |
24066967 |
T |
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| Q |
208 |
atgtgttactaaaattattattagcgccaattctacaacatatattataacagaaatgagtctctagtttttcacatatgtttctgcgcgagtaaatttc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24066968 |
atgtgttactaaaattattattagcgccaattctacaacatatattataacagaaatgagtctctagtttttcacatatgtttctgcgcgagtaaatttc |
24067067 |
T |
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| Q |
308 |
agcgagcgtttcttacctgataag |
331 |
Q |
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|||||||||||||||||||||||| |
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| T |
24067068 |
agcgagcgtttcttacctgataag |
24067091 |
T |
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