View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_37 (Length: 343)
Name: NF2700_low_37
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 29612201 - 29611878
Alignment:
| Q |
10 |
aggagcagagaccaaaaacctcaatttgtactcaccgttgattgtaatcccaagt--------attgactt-cttgaaaaagcagggaacgaatgtgtgt |
100 |
Q |
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| T |
29612201 |
aggaacagaaaccaaaaacctcaatttgtactcaccgttgattgtggtcccaagtgattcagtaatgattgacttgaaaaagcagggaacgaatctgtgt |
29612102 |
T |
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| Q |
101 |
aggggtgcagttgtcctgaaaacatgcacatcaaataaaaactttgtgttagatatttgttagaatttgtgtaggtagttagaagttaattatgattaga |
200 |
Q |
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| T |
29612101 |
agtagtgcagttgtcctgaaaacatgcacatcaaataaaaact--gtgttagatatttgttagaatttgtttaggtagttagaagttaattatgattaga |
29612004 |
T |
|
| Q |
201 |
tggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctttggtctattaattccatataattcat |
300 |
Q |
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| T |
29612003 |
tggaagtttattatgttagttaacttgggatcacaatataaaggtgtatcctaccgtaattgtatcatattctttggtctattaattccatataattcat |
29611904 |
T |
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| Q |
301 |
ctctctctcaatttatttctcttagt |
326 |
Q |
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| T |
29611903 |
ctttctctcaatttatttctcttagt |
29611878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 38467139 - 38467228
Alignment:
| Q |
185 |
gttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctt |
274 |
Q |
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| T |
38467139 |
gttagttatgattaggtggaaatttgttatgttagttaacttgggatcactatataaagatgtatcctaccctaattgaatcatattctt |
38467228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 320
Target Start/End: Complemental strand, 25953405 - 25953296
Alignment:
| Q |
211 |
ttatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctttggtctattaattccatataattcatctctctctca |
310 |
Q |
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| T |
25953405 |
ttatgttagttaacttaagattattatataaaagtgtatcctaccctagttatatcatattcttcattctattatttcaaaataattcatatttttctca |
25953306 |
T |
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| Q |
311 |
atttatttct |
320 |
Q |
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|||||||||| |
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| T |
25953305 |
atttatttct |
25953296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 17236659 - 17236561
Alignment:
| Q |
176 |
tagttagaagttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctt |
274 |
Q |
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| T |
17236659 |
tagttagaagttagttatgattaggtggaagttaattatgttagttaccttgggatcactgtataaaggtatatcttactctaatcgtatcatattctt |
17236561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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