View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2700_low_4 (Length: 718)
Name: NF2700_low_4
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_4 |
 | |
|
| [»] scaffold0001 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 12 - 700
Target Start/End: Original strand, 32569712 - 32570410
Alignment:
| Q |
12 |
atgaatccatccttcaacaacaaacatatctcacaggatttggaaacaaggaaaacaacatcacaacaataatttcataaacaaatattgctactgccac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32569712 |
atgaatccatccttcaacaacaaacatatctcacaggatttggaaacaaggaaaacaacatcacaacaataatttcataaacaaatattgctactgccac |
32569811 |
T |
|
| Q |
112 |
cccaattaactactctgcatgccagaaactgtgttactgataaatctagaaattgtcttagtttttatattcacataaaagccaaaacagatcacgcaat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32569812 |
cccaattaactactctgcatgccagaaactgtgttactgataaatctagaaattgtcttagtttttatattcacataaaagccaaaacagatcacgcaat |
32569911 |
T |
|
| Q |
212 |
ttgaagtactattttttattt----------cttaagtcaatgacatgccccactaattaaatttatcattgtaatgaacatatccatatgaaatatgat |
301 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32569912 |
ttgaagtactatttttcattttttaatagaccttaagtcaatgacatgccccactaattaaatttatcattgtaatgaacatatccatatgaaatatgat |
32570011 |
T |
|
| Q |
302 |
taaaatagttaaaatatcatacagagaaaacaattatttagaacctttctattccacaaacaaaatagattaaggcctgttcacaaacaaaattatttag |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32570012 |
taaaatagttaaaatatcatacagagaaaacaattatttagaacctttctattccacaaacaaaatagtttaaggcctgttcacaaacaaaattatttag |
32570111 |
T |
|
| Q |
402 |
aaccttcctattccacaaacaaaataattctttcttttacaaattttgataagagatctacaacattgtttttgaaaatgcattcttccaactaaaatta |
501 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32570112 |
aacctttctattccacaaacaaaataattctttcttttacaaattttgataagagatctacaacattgtttttgaaaatgcattcttccaactaaaatta |
32570211 |
T |
|
| Q |
502 |
ttttaatttgcatcaagagtgccccgacagagagagtcgggactactccctcgatgtaaatagatctatttaagagattgacgttccaaccagaaattga |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32570212 |
ttttaatttgcatcaagagtgccccgacagagagagtcgggactacaccctcgatgtaaatagatctatttaagagattgacgttccaaccagaaattga |
32570311 |
T |
|
| Q |
602 |
actcagacaacaaactttaaaacgacgagttatctgacaaccatgtcatgctattaatttcttatttgcacatgagacaaaagcaatgaaagagaaagc |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32570312 |
actcagacaacaaactttaaaacgacgagttatctgacaaccatgtcacgctattaatttcttatttgcacatgagacaaaagcaatgaaagagaaagc |
32570410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 4288 - 4134
Alignment:
| Q |
12 |
atgaatccatccttcaacaacaaacatatctcacaggatttggaaacaaggaaaacaacatcacaacaataatttcataaacaaatattgctactgcc-a |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
4288 |
atgaatccaaccttcaacaacaaacatatctcacgggatttggaaacagggaaaacaacataacaacaatgatttcataaacaaatattgctactgccaa |
4189 |
T |
|
| Q |
111 |
ccccaattaactactctgcatgccagaaactgtgttactgataaatctagaaatt |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4188 |
ccccaattaactactctgcatgccagaaactgtgttactgataaatctagaaatt |
4134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 4132 - 4061
Alignment:
| Q |
263 |
atttatcattgtaatgaacatatccatatgaaatatgattaaaatagttaaaatatcatacagagaaaacaa |
334 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
4132 |
atttatcattgtaatgaacatatccgtatgaaatatgattaaaatagttaaaatatcatacatagaagacaa |
4061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University