View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_40 (Length: 334)
Name: NF2700_low_40
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 5679950 - 5679812
Alignment:
| Q |
12 |
tcatacaaaactatatttcatttcattatattagattatataagtaa-atgttttaatatt--actttactacgttgtgacttaaaatttgagggttgca |
108 |
Q |
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| T |
5679950 |
tcatgcaaaactatatttcatttcattatattagattatataagtaatatgttttaatattttactttactacgttgtgacttaaaatttgagggttgca |
5679851 |
T |
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| Q |
109 |
aggcatgcaccggttgctcggaaataatgaagttaccac |
147 |
Q |
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| T |
5679850 |
aagcatgcaccggttgctcggaaataatgaagttaccac |
5679812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 213 - 318
Target Start/End: Complemental strand, 5679745 - 5679640
Alignment:
| Q |
213 |
gcattaaatttcaggtttgaaattcttgaaaacaaatcgagggttgctcgtaaaacaataaagtcgtcaccaaaacttattaaaataggaaaaacattgg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5679745 |
gcattaaatttcaggtttgaaattcttgaaaacaaatcgagggttgctcgtaaaacaataaagtcgtcaccaaaacttattaaaataggaaaaacattgg |
5679646 |
T |
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| Q |
313 |
gaaaaa |
318 |
Q |
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|||||| |
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| T |
5679645 |
gaaaaa |
5679640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 5984158 - 5984213
Alignment:
| Q |
251 |
gagggttgctcgtaaaacaataaagtcgtcaccaaaacttattaaaataggaaaaa |
306 |
Q |
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| T |
5984158 |
gagggttgctcaaaaaacaatgaagtcgccaccaaaggttattaaaataggaaaaa |
5984213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 38318980 - 38319034
Alignment:
| Q |
252 |
agggttgctcgtaaaacaataaagtcgtcaccaaaacttattaaaataggaaaaac |
307 |
Q |
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| T |
38318980 |
agggttgctcg-aaaacaacaaagttgccaccaaaatttattaaaataggaaaaac |
38319034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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