View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_41 (Length: 333)
Name: NF2700_low_41
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 29057221 - 29056905
Alignment:
| Q |
18 |
agtatccatttgaaatcg-acggaccagatccgtgcttaaacgtgggaaaaatccaattccaaattacaaacagtccaaaacacaaacaccatcgatctc |
116 |
Q |
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| T |
29057221 |
agtatccatttgaaatcggacggaccagatccgtgcttaaacgtgggaaaaatccaattccaaattacaaacagtccaaaacacaaacaccatcgatctc |
29057122 |
T |
|
| Q |
117 |
ttcacccgcctcatcataaccgattaaaccaccaccactctcttgaaactctcgcgcgctgttctccacgacttctagaaccttccttcaatggccacgg |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29057121 |
ttcaaccgcctcatcataaccgattaaaccaccaccactctcttgaaactctcgcgcgctattctccacgacttctagaaccttccttcaatggccacgg |
29057022 |
T |
|
| Q |
217 |
ctacgcttaactccgccaccaccgataacaa---------cctcaaatccgccgtcgctgcattgtcacaaatcaggtaggtcctcactcttttcttcat |
307 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29057021 |
ctacgcttaactccgccaccaccgataacaacctctccaacctcaaatccgccgtcgctgcattgtcacaaatcaggtaggtcctcactcttttcttcat |
29056922 |
T |
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| Q |
308 |
ttaattttttcttcatc |
324 |
Q |
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||||||||||||||||| |
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| T |
29056921 |
ttaattttttcttcatc |
29056905 |
T |
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