View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700_low_42 (Length: 332)

Name: NF2700_low_42
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700_low_42
NF2700_low_42
[»] chr2 (1 HSPs)
chr2 (21-324)||(1351281-1351580)


Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 21 - 324
Target Start/End: Complemental strand, 1351580 - 1351281
Alignment:
Q  21 atgactaagtaagttattaccactgagttagcagcaccaatctcgcattaacgcgatttggaaataaatcaaaattatcttcaggaagattttatttgca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1351580 atgactaagtaagttattaccactgagttagcagcaccaatctcgcattaacgcgatttggaaataaatcaaaatcatcttcaggaagattttatttgca 1351481  T
Q  121 gcaatatctaaattgaacttgtaagccttaactcttgaagagcagcacttcacttaccaatttttccaaattcaaagaggatgaaccatcaacattggtt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  1351480 gcaatatctaaattgaacttgtaagccttaactcttgaagagcagcacttcacttaccaatttttccaaattcaaagaggatgaaccatcaacattg--- 1351384  T
Q  221 ggttgcttcttctgccattttcttccactcaattgcttttatcctcatctccttacccttttcaccctctattaactctaccacaaccttctccacttca 320  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  1351383 -gttgcttcttctgccattttcttccactcaattgcttttatcctcatctccttacccttttcaccctctattaactctaccactagcttctccacttca 1351285  T

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