View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700_low_44 (Length: 329)

Name: NF2700_low_44
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700_low_44
NF2700_low_44
[»] chr5 (1 HSPs)
chr5 (16-307)||(42533550-42533841)


Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 42533841 - 42533550
Alignment:
Q  16 caccatgtacagcctcttgtaaccaccgagagccaccacaactggccggacggaagctggtggtggagtggagacatggcggaagcagaggtgttcccag 115  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42533841 caccatgtacagcctcttgtaaccacccagagccaccacgactggccggacggaagctggtggtggagtggagacatggcggaagcagaggtgttcccag 42533742  T
Q  116 attgagtcgtctttggttgttaagttgcaccataagcgacagacacatgatgctacaccgagtgatggaccgtcgaggcgtttaaggatttctcgtagaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42533741 attgagtcgtctttggttgttaagttgcaccataagcgacagacacatgatgctacaccgagtgatggaccgtcgaggcgtttaaggatttctcgtagaa 42533642  T
Q  216 tgtcgatgttgtcgtttatgaagaacttgtgtcttttactttgttgttgtgtccttgaagtggttcttcttgttccttcttgcatgtattca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42533641 tgtcgatgttgtcgtttatgaagaacttgtgtcttttactttgttgttgtgtccttgaagtggttcttcttgttccttcttgcatgtattca 42533550  T

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