View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2700_low_47 (Length: 313)
Name: NF2700_low_47
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_47 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 46289298 - 46289584
Alignment:
| Q |
13 |
cagaggtggcagaactgagaacagtgaactggttagaaatagaaggcagaattagaacgaagattctaacgccaaacacatcatatgcagcatatctcgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46289298 |
cagaggtggcagaactgagaacagtgaactggttagaaatagaaggcagaattagaacgaagattctaacgccaaacacatcatatgcagcatatctcgt |
46289397 |
T |
|
| Q |
113 |
aatgaaaagctctcatagagcgtacggacttgactctactccttcagaagtttcaattgggataggaaacaaagtgaacagagcgaaagcatatttgtgc |
212 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46289398 |
aatgaaaagttctcatagagcgtacggacttgactctactcctacagaagtttcaattgtgataggaaacaaagtgaacagagggaaagcatatttgtgc |
46289497 |
T |
|
| Q |
213 |
attaaagatgagaacaaacgtaatatggagacactgttttacgggaacagaagaaacagagtgattcaagaacaagaagatggaggt |
299 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46289498 |
attaaagatgagaacaaacgcaatatggagacactgttttacgggaacagaagaaacagagtgattcaagaacaagaagatggaggt |
46289584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University