View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2700_low_5 (Length: 687)
Name: NF2700_low_5
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_5 |
 | |
|
| [»] scaffold0100 (1 HSPs) |
| | |
|
| [»] scaffold0211 (1 HSPs) |
| | |
|
| [»] scaffold0302 (2 HSPs) |
| | |
|
| [»] scaffold0084 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 643; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 18 - 676
Target Start/End: Original strand, 21934084 - 21934742
Alignment:
| Q |
18 |
cgttatgagttcaatcatatgaaaacatccaccagaggaactaaaaatataacacagtgatgatgaattcttcaaatatttaatataaaaattctacaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21934084 |
cgttatgagttcaatcatatgaaaacatccaccagaggaactaaaaatataacacagtgatgatgaattcttcaaatatttaatataaaaattctacaca |
21934183 |
T |
|
| Q |
118 |
aacttttagagctttattatatgaatcaagaacaaagtacatgtaatatctcttccaattttattaactgaaatgaacaatatatagctccattgtaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21934184 |
aacttttagagctttattatatgaatcaagaacaaagtacatgtaatatctcttccaattttattaactgaaatgaacaatatatagctccattgtaaat |
21934283 |
T |
|
| Q |
218 |
aaaaacaagggtacctataaattaaaaattattctttctggaaaacaagagggaggggaccaccatctagggccaacaaaatcttaccattctcattcaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21934284 |
aaaaacaagggtacctataaattaaaaattattctttctggaaaacaagagggaggggaccaccatctagggccaacaaaatcttaccattctcattcaa |
21934383 |
T |
|
| Q |
318 |
catatcaacagttccacattcaaatttacaacttggacatacctctgtaggacaccattgtatattatacataccttcaagtggggtctctacaatccta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21934384 |
catatcaacagttccacattcaaatttacaacttggacatacctctgtaggacaccattgtatattatacataccttcaagtggggtctctacaatccta |
21934483 |
T |
|
| Q |
418 |
aagaagttaccatatgatccattggtagcactatctgtcccagtgataatcaaccttcttccactcttggtgtctttctcacccaatctccattctgttg |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21934484 |
aagaagttaccatatgatccattggtagcactatctgtcccagtgataatcaaccttcttccactcttggtgtctttctcacctaatctccattctgttg |
21934583 |
T |
|
| Q |
518 |
attgtacacaacttgatgaagcttggaatgttattctcaagtctctgttaaccctaacatcgtcgaagtcgtgatggggagcaaatggtgtgaacttgac |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
21934584 |
attgtacacaacttgatgaagcttggaatgttattctcaagtctctgttaaccctaacatcgtcgaagtcatgatggggagcaaatggtgtgaatttgac |
21934683 |
T |
|
| Q |
618 |
aaccagtccgcgtcctaagccagtgagctcaagaccaacatgtaaagggcatgattcat |
676 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21934684 |
aaccagcccgcgtcctaagccagtgagctcaagaccaacatgtaaagggcatgattcat |
21934742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 245 - 602
Target Start/End: Original strand, 21370418 - 21370775
Alignment:
| Q |
245 |
attattctttctggaaaacaagagggaggggaccaccatctagggccaacaaaatcttaccattctcattcaacatatcaacagttccacattcaaattt |
344 |
Q |
| |
|
|||||||||||||||| |||| || |||||| ||||| || |||||||||||||||||||||||| | ||| ||||||| ||||||||||| || |
|
|
| T |
21370418 |
attattctttctggaacacaatgggaaggggagtgccatcaagagccaacaaaatcttaccattctcacgaacaataccaacagtcccacattcaaactt |
21370517 |
T |
|
| Q |
345 |
acaacttggacatacctctgtaggacaccattgtatattatacataccttcaagtggggtctctacaatcctaaagaagttaccatatgatccattggta |
444 |
Q |
| |
|
|||| | ||||| || |||||||| |||||||| || ||||| ||| | || || || ||||||||| |||||||||||||| | |||||| ||| |
|
|
| T |
21370518 |
acaattgggacacacttctgtagggcaccattgaatgttatagatatttctaactgcagtttctacaatcttaaagaagttaccaaaggatccaactgta |
21370617 |
T |
|
| Q |
445 |
gcactatctgtcccagtgataatcaaccttcttccactcttggtgtctttctcacccaatctccattctgttgattgtacacaacttgatgaagcttgga |
544 |
Q |
| |
|
|||||||| | ||| |||||| || || |||||| | | | ||| ||||||||||| ||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
21370618 |
ccactatctcttccaatgataacgaatctccttccagttgttgcgtccctctcacccaatttccattctgttgattgtccacaagccgtggaagcttgga |
21370717 |
T |
|
| Q |
545 |
atgttattctcaagtctctgttaaccctaacatcgtcgaagtcgtgatggggagcaaa |
602 |
Q |
| |
|
|| | | | | ||||||||||||| ||| || |||||| ||||||||||||||||| |
|
|
| T |
21370718 |
atatcacttttaagtctctgttaagcctcacctcgtcgtcatcgtgatggggagcaaa |
21370775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 292 - 527
Target Start/End: Original strand, 21403705 - 21403940
Alignment:
| Q |
292 |
aacaaaatcttaccattctcattcaacatatcaacagttccacattcaaatttacaacttggacatacctctgtaggacaccattgtatattatacatac |
391 |
Q |
| |
|
|||| |||||||||||||||| | ||| ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || ||| | |||| |
|
|
| T |
21403705 |
aacagaatcttaccattctcacgaacaataccaacagtcccacattcaaacttacaacttggacacacctctgtaggacaccattggatgttaaagatac |
21403804 |
T |
|
| Q |
392 |
cttcaagtggggtctctacaatcctaaagaagttaccatatgatccattggtagcactatctgtcccagtgataatcaaccttcttccactcttggtgtc |
491 |
Q |
| |
|
|| | ||| || | |||||||||||||||||||||||||||||| ||| | |||| | || |||||||| |||||||||||| || | | ||| |
|
|
| T |
21403805 |
ctctacttggagtttgcacaatcctaaagaagttaccatatgatccaactgtactatcatctcttccggtgataatgaaccttcttccagtcgttgcgtc |
21403904 |
T |
|
| Q |
492 |
tttctcacccaatctccattctgttgattgtacaca |
527 |
Q |
| |
|
|||||||||| |||||||||||||| ||| |||| |
|
|
| T |
21403905 |
cctctcacccaacctccattctgttgactgtccaca |
21403940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 292 - 527
Target Start/End: Original strand, 21798197 - 21798432
Alignment:
| Q |
292 |
aacaaaatcttaccattctcattcaacatatcaacagttccacattcaaatttacaacttggacatacctctgtaggacaccattgtatattatacatac |
391 |
Q |
| |
|
|||| |||||||||||||||| | ||| ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || ||| | |||| |
|
|
| T |
21798197 |
aacagaatcttaccattctcacgaacaataccaacagtcccacattcaaacttacaacttggacacacctctgtaggacaccattggatgttaaagatac |
21798296 |
T |
|
| Q |
392 |
cttcaagtggggtctctacaatcctaaagaagttaccatatgatccattggtagcactatctgtcccagtgataatcaaccttcttccactcttggtgtc |
491 |
Q |
| |
|
|| | ||| || | |||||||||||||||||||||||||||||| ||| | |||| | || |||||||| |||||||||||| || | | ||| |
|
|
| T |
21798297 |
ctctacttggagtttgcacaatcctaaagaagttaccatatgatccaactgtactatcatctcttccggtgataatgaaccttcttccagtcgttgcgtc |
21798396 |
T |
|
| Q |
492 |
tttctcacccaatctccattctgttgattgtacaca |
527 |
Q |
| |
|
|||||||||| |||||||||||||| ||| |||| |
|
|
| T |
21798397 |
cctctcacccaacctccattctgttgactgtccaca |
21798432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 238 - 578
Target Start/End: Complemental strand, 4287079 - 4286742
Alignment:
| Q |
238 |
attaaaaattattctttctggaaaacaagagggaggggaccaccatctagggccaacaaaatcttaccattctcattcaacatatcaacagttccacatt |
337 |
Q |
| |
|
||||| ||| ||||||||||||| |||| || |||| ||||||||| |||||||||| |||||| ||||||||| | | | ||||||| ||||||| |
|
|
| T |
4287079 |
attaataatcattctttctggaacacaactggaagggcaccaccatcaagggccaacagaatcttgccattctcacgaataacaccaacagtcccacatt |
4286980 |
T |
|
| Q |
338 |
caaatttacaacttggacatacctctgtaggacaccattgtatattatacataccttcaagtggggtctctacaatcctaaagaagttaccatatgatcc |
437 |
Q |
| |
|
|| |||||||| || || |||||||||| |||||||| || ||||| ||||| || | |||||| ||||||||||| |||||||||| |||||| |
|
|
| T |
4286979 |
gaaccttacaactagggcacgcctctgtagggcaccattgaatgttatagataccaccagtttgggtctgcacaatcctaaaaaagttaccatgtgatcc |
4286880 |
T |
|
| Q |
438 |
attggtagcactatctgtcccagtgataatcaaccttcttccactcttggtgtctttctcacccaatctccattctgttgattgtacacaacttgatgaa |
537 |
Q |
| |
|
| | || ||||| | || || | ||||| ||| ||||||||| | | ||| ||||||||||| ||||| ||||| || || |||||| || || |
|
|
| T |
4286879 |
---tgcaccattatctcttccggtaacaatcagcctccttccactcgttgcgtccttctcacccaacctccaatctgtcgactgcccacaacctgtgaaa |
4286783 |
T |
|
| Q |
538 |
gcttggaatgttattctcaagtctctgttaaccctaacatc |
578 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| ||||| |
|
|
| T |
4286782 |
ccttggaatgttactctcaagtctctgttaagcctcacatc |
4286742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 248 - 578
Target Start/End: Complemental strand, 4295540 - 4295213
Alignment:
| Q |
248 |
attctttctggaaaacaagagggaggggaccaccatctagggccaacaaaatcttaccattctcattcaacatatcaacagttccacattcaaatttaca |
347 |
Q |
| |
|
||||||||||||| || | ||| |||| ||||||||| || ||||| | |||||| ||||||||| | | | ||||||| ||||||| || ||||| |
|
|
| T |
4295540 |
attctttctggaacacgacaggaagggcaccaccatcaagcgccaaaagaatcttgccattctcacgaataacaccaacagtcccacattgaaccttaca |
4295441 |
T |
|
| Q |
348 |
acttggacatacctctgtaggacaccattgtatattatacataccttcaagtggggtctctacaatcctaaagaagttaccatatgatccattggtagca |
447 |
Q |
| |
|
||| || || |||||||||| |||||||| || ||||| ||||| || | |||||| ||||||||||| |||||||||| |||||| | | || |
|
|
| T |
4295440 |
actagggcacgcctctgtagggcaccattgaatgttatagataccaccagtttgggtctgcacaatcctaaaaaagttaccatgtgatcct---gcacca |
4295344 |
T |
|
| Q |
448 |
ctatctgtcccagtgataatcaaccttcttccactcttggtgtctttctcacccaatctccattctgttgattgtacacaacttgatgaagcttggaatg |
547 |
Q |
| |
|
||||| | || || | ||||| ||| ||||||||| | | ||| ||||||||||| ||||| ||||| || || |||||| || || ||||||||| |
|
|
| T |
4295343 |
ttatctcttccggtaacaatcagcctccttccactcgttgcgtccttctcacccaacctccaatctgtcgactgcccacaacctgtgaaaccttggaatg |
4295244 |
T |
|
| Q |
548 |
ttattctcaagtctctgttaaccctaacatc |
578 |
Q |
| |
|
||| ||||||||||||||||| ||| ||||| |
|
|
| T |
4295243 |
ttactctcaagtctctgttaagcctcacatc |
4295213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 465 - 581
Target Start/End: Complemental strand, 34106 - 33990
Alignment:
| Q |
465 |
aatcaaccttcttccactcttggtgtctttctcacccaatctccattctgttgattgtacacaacttgatgaagcttggaatgttattctcaagtctctg |
564 |
Q |
| |
|
||||||||| ||||||||| | | |||||||| ||||||||||| |||||||| || ||||||||| || | | ||||||||| ||||||||||||| |
|
|
| T |
34106 |
aatcaacctccttccactcgttgcatctttctcgcccaatctccagtctgttgactgcccacaacttgtggaggttaggaatgttactctcaagtctctg |
34007 |
T |
|
| Q |
565 |
ttaaccctaacatcgtc |
581 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
34006 |
ttaagcctaacatcgtc |
33990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 248 - 614
Target Start/End: Original strand, 25796 - 26150
Alignment:
| Q |
248 |
attctttctggaaaacaagagggaggggaccaccatctagggccaacaaaatcttaccattctcattcaacatatcaacagttccacattcaaatttaca |
347 |
Q |
| |
|
||||||||||||| || | || |||| |||||| || ||||||||||||||||| ||||||||| | | | ||||||| ||||||| || ||||| |
|
|
| T |
25796 |
attctttctggaacacgactggaagggcaccaccgtcgagggccaacaaaatcttgccattctcacgaataacaccaacagtcccacattgaatattaca |
25895 |
T |
|
| Q |
348 |
acttggacatacctctgtaggacaccattgtatattatacataccttcaagtggggtctctacaatcctaaagaagttaccatatgatccattggtagca |
447 |
Q |
| |
|
||| || || |||||| ||||||||||||| || ||||| ||||| || | |||||| ||||||||||| |||||||| | |||| |
|
|
| T |
25896 |
actagggcacacctctttaggacaccattgaatgttatagttacctccagtttgggtctgcacaatcctaaaaaagttaccttc------------agca |
25983 |
T |
|
| Q |
448 |
ctatctgtcccagtgataatcaaccttcttccactcttggtgtctttctcacccaatctccattctgttgattgtacacaacttgatgaagcttggaatg |
547 |
Q |
| |
|
||||| | || |||| ||||||||| |||||||| | | ||||||||||| |||||||| |||||||| || ||||||||| || | | |||||| |
|
|
| T |
25984 |
ttatctcttccggtgacaatcaacctccttccacttgtagcatctttctcacctaatctccagtctgttgactgcccacaacttgtggatgttaggaatg |
26083 |
T |
|
| Q |
548 |
ttattctcaagtctctgttaaccctaacatcgtcgaagtcgtgatggggagcaaatggtgtgaactt |
614 |
Q |
| |
|
| | ||||||||||||||||| || ||||| ||| || ||||| |||||||| || |||||||| |
|
|
| T |
26084 |
taactctcaagtctctgttaagcccaacattgtcatcatcatgatgaggagcaaaaggagtgaactt |
26150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 457 - 614
Target Start/End: Original strand, 14988 - 15145
Alignment:
| Q |
457 |
ccagtgataatcaaccttcttccactcttggtgtctttctcacccaatctccattctgttgattgtacacaacttgatgaagcttggaatgttattctca |
556 |
Q |
| |
|
||||||| |||||| || |||||||| | | ||||||||||| |||||||| |||||||| || ||||||||| || | | ||||||| | ||||| |
|
|
| T |
14988 |
ccagtgacaatcaatctccttccacttgtagcatctttctcacctaatctccagtctgttgactgcccacaacttgtggatgttaggaatgtaactctca |
15087 |
T |
|
| Q |
557 |
agtctctgttaaccctaacatcgtcgaagtcgtgatggggagcaaatggtgtgaactt |
614 |
Q |
| |
|
|||||||||||| |||||||| ||| || ||||| |||||||| || |||||||| |
|
|
| T |
15088 |
agtctctgttaagcctaacattgtcatcatcatgatgaggagcaaaaggagtgaactt |
15145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 14779 - 14842
Alignment:
| Q |
248 |
attctttctggaaaacaagagggaggggaccaccatctagggccaacaaaatcttaccattctc |
311 |
Q |
| |
|
||||||||||||| || | || |||| ||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
14779 |
attctttctggaacacgactggaagggcaccaccatcgagggccaacaaaatctttccattctc |
14842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 248 - 386
Target Start/End: Complemental strand, 17533 - 17395
Alignment:
| Q |
248 |
attctttctggaaaacaagagggaggggaccaccatctagggccaacaaaatcttaccattctcattcaacatatcaacagttccacattcaaatttaca |
347 |
Q |
| |
|
||||||||||||| || | || |||| || |||||| ||||||||||||||||| ||||||||| | | | ||||||| ||||||| || ||||| |
|
|
| T |
17533 |
attctttctggaacacgactggaagggcacgaccatcgagggccaacaaaatcttgccattctcacgaataacaccaacagtcccacattgaatattaca |
17434 |
T |
|
| Q |
348 |
acttggacatacctctgtaggacaccattgtatattata |
386 |
Q |
| |
|
||| || || |||||| |||| |||||||| || ||||| |
|
|
| T |
17433 |
actagggcacacctctttagggcaccattgaatgttata |
17395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 540
Target Start/End: Original strand, 30902687 - 30902756
Alignment:
| Q |
471 |
ccttcttccactcttggtgtctttctcacccaatctccattctgttgattgtacacaacttgatgaagct |
540 |
Q |
| |
|
||||||||||||||| || ||| | ||||| ||| ||||||| || |||||||||||| |||| |||||| |
|
|
| T |
30902687 |
ccttcttccactcttagtatctctatcacctaatttccattcagtggattgtacacaaattgaagaagct |
30902756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University