View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_50 (Length: 307)
Name: NF2700_low_50
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 7419748 - 7419451
Alignment:
| Q |
1 |
tgacatccaattctgccttcatttatgtggacaagcgaaaggtgtctattgaggtcagtttgagtagcctcattagctccaaatttgttccaccgactgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7419748 |
tgacatccaattctgccttcatttatgtggacaagcgaaaggtgtctattgaggtcagtttgagtagcctcattagctccaaatttgttccaccgactgt |
7419649 |
T |
|
| Q |
101 |
ctgtcttccttagatatataagaattataggcctttatttaaaaatctccaatgctacttatctgaatcctatggctgtaaaagtaccggcaatagaact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7419648 |
ctgtcttccttagatatataagaattataggcctttatttaaaaatctccaatgctaattatctgaatcctatggctgtaaaagtaccggcaatagaact |
7419549 |
T |
|
| Q |
201 |
ataatatattaagttactataagtctatactgtgctaaaacaatgataaaaattcttctgcccttgtatatgtatataatgagtaacaatagtataat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7419548 |
ataatatattaagttactataagtctatactgtgctaaaacaatgataaaaattcttctgcccttgtatatgtatataatgagtaacaatggtataat |
7419451 |
T |
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