View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_53 (Length: 303)
Name: NF2700_low_53
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 968978 - 968709
Alignment:
| Q |
21 |
tcaaatctcttgttcacgtgacatagcaccacatatatattctagaaccaacaaggtgatatcaaactttcaacacagacttcta------gggaatttt |
114 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
968978 |
tcaaatctcttgtttaggtgacatagcaccacatatatattctagaaccaataaggtgatatcaaactttcaacacagacttctacttctagggcatttt |
968879 |
T |
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| Q |
115 |
ccaaccgagtacacgcaaaagtaccatttattgaattgtaaataatccattttcggataccatatttgtctgtacacttcagcaacatttggttttcctc |
214 |
Q |
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| T |
968878 |
ctaaccgagtacacgcaaaagtaccatttattgaattgtaaataatccattttcgggtaccatatttgcctgtacacttcagcaacacttggttttcctc |
968779 |
T |
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| Q |
215 |
aaaaatatttactatatcaataataatgtaagttataggaagataagaaatagtgaataatttagtccat |
284 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
968778 |
aaaaatatttactatatcaataataatataagttataggaagataagaaatagtgaataatttagtccat |
968709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 23644685 - 23644648
Alignment:
| Q |
70 |
aacaaggtgatatcaaactttcaacacagacttctagg |
107 |
Q |
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| T |
23644685 |
aacaaggtgatatcaaactttcaacgcagacttctagg |
23644648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 23732421 - 23732384
Alignment:
| Q |
70 |
aacaaggtgatatcaaactttcaacacagacttctagg |
107 |
Q |
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| T |
23732421 |
aacaaggtaatatcaaactttcaacgcagacttctagg |
23732384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 23769439 - 23769476
Alignment:
| Q |
70 |
aacaaggtgatatcaaactttcaacacagacttctagg |
107 |
Q |
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||||||||||||||||||||||||| |||| ||||||| |
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| T |
23769439 |
aacaaggtgatatcaaactttcaacgcagatttctagg |
23769476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 23813889 - 23813926
Alignment:
| Q |
70 |
aacaaggtgatatcaaactttcaacacagacttctagg |
107 |
Q |
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|||||||||||||||||||||| || |||||||||||| |
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| T |
23813889 |
aacaaggtgatatcaaactttcgacgcagacttctagg |
23813926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 23819287 - 23819324
Alignment:
| Q |
70 |
aacaaggtgatatcaaactttcaacacagacttctagg |
107 |
Q |
| |
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||||||||||||||||||||||||| |||| ||||||| |
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| T |
23819287 |
aacaaggtgatatcaaactttcaacgcagatttctagg |
23819324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 20019562 - 20019599
Alignment:
| Q |
70 |
aacaaggtgatatcaaactttcaacacagacttctagg |
107 |
Q |
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||||||||||||||||||| |||||||| ||||||||| |
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| T |
20019562 |
aacaaggtgatatcaaactctcaacacatacttctagg |
20019599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 1420955 - 1420987
Alignment:
| Q |
72 |
caaggtgatatcaaactttcaacacagacttct |
104 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
1420955 |
caaggtgatatcaaactttcaacatagacttct |
1420987 |
T |
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