View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700_low_54 (Length: 299)

Name: NF2700_low_54
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700_low_54
NF2700_low_54
[»] chr8 (2 HSPs)
chr8 (5-285)||(9888732-9889021)
chr8 (6-285)||(4966439-4966727)
[»] chr2 (2 HSPs)
chr2 (7-285)||(28926075-28926363)
chr2 (7-75)||(6667463-6667531)
[»] chr3 (4 HSPs)
chr3 (46-151)||(37605345-37605451)
chr3 (231-285)||(37605203-37605257)
chr3 (7-75)||(15291461-15291529)
chr3 (7-72)||(15996384-15996449)
[»] chr1 (2 HSPs)
chr1 (46-151)||(46555542-46555648)
chr1 (231-281)||(46555736-46555786)
[»] chr7 (1 HSPs)
chr7 (3-75)||(48850722-48850794)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 5 - 285
Target Start/End: Complemental strand, 9889021 - 9888732
Alignment:
Q  5 aaatctttcttactaaagcttatttggtga-gctattgtttgccctaattctaaacctaatttttccctccactaaacaagcattaaatcctctaaagtg 103  Q
    ||||||| |||| |||||||| | |||| | |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9889021 aaatcttacttattaaagcttgtctggtcaagctattgtttaccctaattctaaacctaatatttccctccactaaacaagcattaaatcctctaaagtg 9888922  T
Q  104 gttttccttatcagcattccactcaaaaattcaattttgcatcccacacatttcttaacctaccaatccattgtatctac---------taaggaatcca 194  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||         |||||||||||    
T  9888921 gttttccttatcagcattcca-tcaacaattcaatttttcatcccacacatttcttaacctaccaatccattgtatccactactgcaattaaggaatcca 9888823  T
Q  195 atcatgtctatcggttactccacaatcatgtgtcattttcaaatctagcaacccttttgttttcccaacatgccaattatgctccctatgc 285  Q
    ||||| | |||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  9888822 atcatctgtatcggttactccacaatcatgtgccattttcaaatccagcagcccttttgttttcccaacatgccaattatgctccctatgc 9888732  T

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Target: chr8; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 6 - 285
Target Start/End: Original strand, 4966439 - 4966727
Alignment:
Q  6 aatctttcttactaaagcttatttggtga-gctattgtttgccctaattctaaacctaatttttccctccactaaacaagcattaaatcctctaaagtgg 104  Q
    |||||| |||| |||||||| | |||| | |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4966439 aatcttacttattaaagcttgtctggtcaagctattgtttaccctaattctaaacctaatatttccctccactaaacaagcattaaatcctctaaagtgg 4966538  T
Q  105 ttttccttatcagcattccactcaaaaattcaattttgcatcccacacatttcttaacctaccaatccattgtatc---tac------taaggaatccaa 195  Q
    |||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||   |||      ||||||||||||    
T  4966539 ttttccttatcagcattcca-tcaacaattcaatttttcatcccacacatttcttaacctaccaatccattgtatccattactgcaattaaggaatccaa 4966637  T
Q  196 tcatgtctatcggttactccacaatcatgtgtcattttcaaatctagcaacccttttgttttcccaacatgccaattatgctccctatgc 285  Q
    |||| | |||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  4966638 tcatctgtatcggttactccacaatcatgtgccattttcaaatccagcagcccttttgttttcccaacatgccaattatgctccctatgc 4966727  T

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Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 7 - 285
Target Start/End: Original strand, 28926075 - 28926363
Alignment:
Q  7 atctttcttactaaagcttatttggtga-gctattgtttgccctaattctaaacctaatttttccctccactaaacaagcattaaatcctctaaagtggt 105  Q
    ||||||||||||||||||| | |||| | ||||||  |  |||||||||| ||||||||||||||||||||||| ||  |||| ||| |||| |||||||    
T  28926075 atctttcttactaaagcttgtctggtcaagctattagtaaccctaattcttaacctaatttttccctccactaatcacacatttaattctcttaagtggt 28926174  T
Q  106 tttccttatcagcattccactcaaaaattcaattttgcatcccacacatttcttaacctaccaatccattgtatctac---------taaggaatccaat 196  Q
    |||||||||||||||| ||||||| ||||||| ||| |||||||||| ||||| |  ||  | ||||||||| |||||         ||| | || ||||    
T  28926175 tttccttatcagcatttcactcaacaattcaagttttcatcccacacgtttctaattctgtcgatccattgtttctactactgtatttaatgcattcaat 28926274  T
Q  197 catgtctatcggttactccacaatcatgtgtcattttcaaatctagcaacccttttgttttcccaacatgccaattatgctccctatgc 285  Q
    ||| | | | | || ||||| ||||||| | |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  28926275 catctatgttgttttctccaaaatcatgcgccattttcaaatctaacagcccttttgttttcccaacatgccaattatgctccctatgc 28926363  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 6667463 - 6667531
Alignment:
Q  7 atctttcttactaaagcttatttggtga-gctattgtttgccctaattctaaacctaatttttccctcca 75  Q
    ||||||||| ||||||||| |||||| | |||||||||| ||||||| |||| |||||||||||||||||    
T  6667463 atctttctttctaaagcttgtttggtcaagctattgtttaccctaatcctaa-cctaatttttccctcca 6667531  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 37605451 - 37605345
Alignment:
Q  46 ccctaattctaaacctaat-ttttccctccactaaacaagcattaaatcctctaaagtggttttccttatcagcattccactcaaaaattcaattttgca 144  Q
    |||||||||| |||||||| ||||||||||||||| ||| |||| ||| ||||  |||||||||||||||||||||| ||||||| ||||||| ||| ||    
T  37605451 ccctaattcttaacctaatattttccctccactaatcaaacatttaattctcttgagtggttttccttatcagcatttcactcaacaattcaagttttca 37605352  T
Q  145 tcccaca 151  Q
    |||||||    
T  37605351 tcccaca 37605345  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 37605257 - 37605203
Alignment:
Q  231 tttcaaatctagcaacccttttgttttcccaacatgccaattatgctccctatgc 285  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  37605257 tttcaattctagcagcccttttattttcccaacatgccaattatgctccctatgc 37605203  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 15291461 - 15291529
Alignment:
Q  7 atctttcttactaaagcttatttggt-gagctattgtttgccctaattctaaacctaatttttccctcca 75  Q
    ||||||||||||||||||| ||||||  ||||||||||| |||||| ||| |||||||||||||||||||    
T  15291461 atctttcttactaaagcttgtttggtcaagctattgtttaccctaa-tcttaacctaatttttccctcca 15291529  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 15996449 - 15996384
Alignment:
Q  7 atctttcttactaaagcttatttggtga-gctattgtttgccctaattctaaacctaatttttccct 72  Q
    ||||||||||||||||||| | || | | |||||||||| |||||||||| ||||||||||||||||    
T  15996449 atctttcttactaaagcttgtctgatcaagctattgtttaccctaattct-aacctaatttttccct 15996384  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 46555542 - 46555648
Alignment:
Q  46 ccctaattctaaacctaat-ttttccctccactaaacaagcattaaatcctctaaagtggttttccttatcagcattccactcaaaaattcaattttgca 144  Q
    |||||||||| |||||||| ||||||||||||||| ||| |||| ||| ||||  |||||||||||||||||||||| ||||||| ||||||| ||| ||    
T  46555542 ccctaattcttaacctaatattttccctccactaatcaaacatttaattctcttgagtggttttccttatcagcatttcactcaacaattcaagttttca 46555641  T
Q  145 tcccaca 151  Q
    |||||||    
T  46555642 tcccaca 46555648  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 46555736 - 46555786
Alignment:
Q  231 tttcaaatctagcaacccttttgttttcccaacatgccaattatgctccct 281  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||||||||    
T  46555736 tttcaattctagcagcccttttattttcccaacatgccaattatgctccct 46555786  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 48850722 - 48850794
Alignment:
Q  3 ataaatctttcttactaaagcttatttggt-gagctattgtttgccctaattctaaacctaatttttccctcca 75  Q
    ||||||||||||| ||||||||| | || |  ||||||||||| |||||| ||| |||||||||||||||||||    
T  48850722 ataaatctttctttctaaagcttgtctgatcaagctattgtttaccctaa-tcttaacctaatttttccctcca 48850794  T

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