View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_58 (Length: 291)
Name: NF2700_low_58
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 17514445 - 17514706
Alignment:
| Q |
17 |
ataaaaatacttcgttgttttggcagaaaatttcagaatacctctaagggatcatataaccaccaacatcaaatcttcctcccaaaaagaaaaagtatct |
116 |
Q |
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| T |
17514445 |
ataaaaatattttgttgttttggcacaaaatttcataatacctttgagggatcatataaccaccaacatcaaatattcctcccaaaaagaaaaagtatct |
17514544 |
T |
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| Q |
117 |
atgaaaaatatgagtacttgctgaatccaaagtaaaataacagatgaacaaagttaaaaattgcaacaaaatcaactaaatatttaagacaaaaaattaa |
216 |
Q |
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| T |
17514545 |
atgaaaaatatgagtacttcctgaatccaaagtaaaataacagatgaataaagataaaaattgaaacaaaatcaactaaatctttgagccataaaattga |
17514644 |
T |
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| Q |
217 |
agtttaggtcttgtaattgatattcctgattttattgcttcccatcattgttgttgctacct |
278 |
Q |
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| T |
17514645 |
agtttaggtcttgtaattgatattcctgattttattccttcccatcattgttggtgctacct |
17514706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 17529599 - 17529849
Alignment:
| Q |
17 |
ataaaaatacttcgttgttttggcagaaaatttcagaatacctctaagggatcatataaccaccaacatcaaatcttcctcccaaaaagaaaaagtatct |
116 |
Q |
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| T |
17529599 |
ataaaaatactatgttgttttggcacaaaatttcata-tacctctgggggatcatataaccactaacatcaaatcaccatcc---aaaaaaaaagtatca |
17529694 |
T |
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| Q |
117 |
atgaaaaatatgagtacttgctgaatccaaagtaaaataacagatgaacaaagttaaaaattgcaacaaaatcaactaaatatttaagacaaaaaattaa |
216 |
Q |
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| T |
17529695 |
atgaaaaatatgagtacttcctgaatccaaagtaaaataacagatgaacaaacaaaaaaatggcaacaaaatcaactaaatctttgagccaaaaaattgt |
17529794 |
T |
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| Q |
217 |
agtttaggtcttgtaattgatattcctgattttattgcttcccatcattgttgtt |
271 |
Q |
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| T |
17529795 |
agtttaggtcttgtaattggtattcctgattttattccttcccatcattgttgtt |
17529849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 16856168 - 16856434
Alignment:
| Q |
17 |
ataaaaatacttcgttgttttggcagaaaatttcagaatacctctaaggg-atcatataaccaccaacatcaaatcttcctcccaaaaagaaaa--agta |
113 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||| |||||| ||||||||||||| ||||| |||||| | ||||||||| |||| |||| |
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| T |
16856168 |
ataaaaatactttgttgttttggcagaaaatttcataatacctttaaggggatcatataaccactaacataaaatctccatcccaaaaaaaaaactagta |
16856267 |
T |
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| Q |
114 |
tctatgaaaaatatgagtacttgctgaatccaaagtaaaataacagatgaacaaagttaaaaattgcaacaaaatcaactaaatatttaagacaaaaaat |
213 |
Q |
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| T |
16856268 |
tctatgaaaaatatgagtaatacctgaatccaaagtaaaataacaattgaacaaa-aaaaaaatggcaacaaaat-aactaaatctttgagccaaaaaat |
16856365 |
T |
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| Q |
214 |
taaagtttaggtcttgtaattg----atattcctgattttattgcttcccatcattgttgttgctacct |
278 |
Q |
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| T |
16856366 |
tgaagtttagctcttgtgattgatatatattcctggttttatttcttcccatcattgttgctgctacct |
16856434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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